PF3D7_0518300 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0518300OTHER0.9999570.0000360.000007
No Results

  • Fasta :-

    >PF3D7_0518300 MDLILYNDNLTEKKTEKENVIEHGRGFKRWYPYIDNGGTVIGLTGKDYVILAADTRLSLS YSIYTRFCPKISKLTDKCIIGSSGMQSDIKTLHSLLQKKIQLFVLEHSHYPDIHVIARLL CVILYSRRFFPYYAFNILAGVDENNKGVLYNYDSVGSYCEATHSCVGSGSQLILPILDNR VEQKNQLIKNTNFNLGDDINFVKDAITSATERDIYTGDKTLIYVIDKMGINVNTLDLKQD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0518300.fa Sequence name : PF3D7_0518300 Sequence length : 240 VALUES OF COMPUTED PARAMETERS Coef20 : 3.154 CoefTot : 0.000 ChDiff : -1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.271 0.119 0.478 MesoH : -0.512 0.404 -0.289 0.235 MuHd_075 : 42.670 19.876 11.320 5.971 MuHd_095 : 20.727 8.565 6.590 3.234 MuHd_100 : 18.834 8.527 5.347 2.898 MuHd_105 : 12.310 7.258 2.676 1.470 Hmax_075 : 12.483 7.933 0.968 3.500 Hmax_095 : -12.688 -1.000 -5.305 0.710 Hmax_100 : -5.700 1.800 -3.181 1.400 Hmax_105 : -12.500 0.933 -5.846 -0.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9856 0.0144 DFMC : 0.9495 0.0505
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 240 PF3D7_0518300 MDLILYNDNLTEKKTEKENVIEHGRGFKRWYPYIDNGGTVIGLTGKDYVILAADTRLSLSYSIYTRFCPKISKLTDKCII 80 GSSGMQSDIKTLHSLLQKKIQLFVLEHSHYPDIHVIARLLCVILYSRRFFPYYAFNILAGVDENNKGVLYNYDSVGSYCE 160 ATHSCVGSGSQLILPILDNRVEQKNQLIKNTNFNLGDDINFVKDAITSATERDIYTGDKTLIYVIDKMGINVNTLDLKQD 240 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0518300 13 NDNLTEK|KT 0.071 . PF3D7_0518300 14 DNLTEKK|TE 0.071 . PF3D7_0518300 17 TEKKTEK|EN 0.065 . PF3D7_0518300 25 NVIEHGR|GF 0.085 . PF3D7_0518300 28 EHGRGFK|RW 0.120 . PF3D7_0518300 29 HGRGFKR|WY 0.196 . PF3D7_0518300 46 VIGLTGK|DY 0.062 . PF3D7_0518300 56 ILAADTR|LS 0.066 . PF3D7_0518300 66 SYSIYTR|FC 0.096 . PF3D7_0518300 70 YTRFCPK|IS 0.058 . PF3D7_0518300 73 FCPKISK|LT 0.062 . PF3D7_0518300 77 ISKLTDK|CI 0.077 . PF3D7_0518300 90 GMQSDIK|TL 0.064 . PF3D7_0518300 98 LHSLLQK|KI 0.062 . PF3D7_0518300 99 HSLLQKK|IQ 0.093 . PF3D7_0518300 118 DIHVIAR|LL 0.113 . PF3D7_0518300 127 CVILYSR|RF 0.063 . PF3D7_0518300 128 VILYSRR|FF 0.104 . PF3D7_0518300 146 GVDENNK|GV 0.062 . PF3D7_0518300 180 LPILDNR|VE 0.072 . PF3D7_0518300 184 DNRVEQK|NQ 0.065 . PF3D7_0518300 189 QKNQLIK|NT 0.069 . PF3D7_0518300 203 DDINFVK|DA 0.081 . PF3D7_0518300 212 ITSATER|DI 0.177 . PF3D7_0518300 219 DIYTGDK|TL 0.062 . PF3D7_0518300 227 LIYVIDK|MG 0.060 . PF3D7_0518300 238 VNTLDLK|QD 0.059 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0518300 ATGGATCTTATATTATATAATGACAATTTAACAGAAAAGAAAACAGAGAAGGAAAATGTA ATAGAGCATGGTCGTGGTTTTAAAAGATGGTATCCATATATTGACAATGGAGGAACTGTC ATTGGCTTAACTGGTAAAGATTATGTTATTTTAGCTGCAGATACAAGATTATCTTTATCA TATTCAATATATACAAGATTCTGCCCAAAGATATCTAAATTGACTGATAAGTGTATTATA GGTTCCTCAGGAATGCAGTCTGATATAAAAACACTCCATTCATTATTACAAAAAAAAATT CAATTGTTTGTTTTGGAACACTCCCATTATCCAGACATTCATGTTATAGCTAGATTGTTG TGTGTAATATTATATAGTAGAAGATTTTTCCCGTATTATGCTTTTAATATCTTAGCAGGA GTCGATGAAAATAATAAAGGAGTCTTATACAATTATGATTCCGTTGGTTCATATTGTGAA GCAACCCACTCCTGTGTTGGTAGTGGTTCCCAATTAATATTACCAATATTAGATAATAGA GTTGAACAAAAAAACCAACTAATTAAAAATACCAATTTTAATTTGGGGGATGATATTAAT TTTGTTAAGGATGCTATTACTTCAGCAACTGAAAGAGACATTTATACAGGAGATAAAACG TTAATTTATGTAATTGATAAAATGGGAATTAATGTAAACACTTTGGATTTAAAACAAGAT TAA
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  • Fasta :-

    MDLILYNDNLTEKKTEKENVIEHGRGFKRWYPYIDNGGTVIGLTGKDYVILAADTRLSLS YSIYTRFCPKISKLTDKCIIGSSGMQSDIKTLHSLLQKKIQLFVLEHSHYPDIHVIARLL CVILYSRRFFPYYAFNILAGVDENNKGVLYNYDSVGSYCEATHSCVGSGSQLILPILDNR VEQKNQLIKNTNFNLGDDINFVKDAITSATERDIYTGDKTLIYVIDKMGINVNTLDLKQD

No Results
No Results
No Results

MAL5P1.183      PFE0915c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India