PF3D7_0608500 | proteasome subunit alpha type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0608500OTHER0.9994270.0000850.000488
No Results

  • Fasta :-

    >PF3D7_0608500 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEEN SIFKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGSEILVKELVKIIASIVQE FTQTGGVRPFGLSLLICGVDVYGYHLYQIDPSGCYFNWMATCVGKDYQNNMSFLEKRYNK DIEIEDAIHTAILTLKESYEGVLNEKNIEIGVAYDNKPFKILTQNEIKDYLIEIE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0608500.fa Sequence name : PF3D7_0608500 Sequence length : 235 VALUES OF COMPUTED PARAMETERS Coef20 : 3.733 CoefTot : 0.141 ChDiff : -5 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.894 1.394 0.133 0.586 MesoH : -0.209 0.494 -0.234 0.291 MuHd_075 : 12.456 2.667 3.042 1.246 MuHd_095 : 16.939 8.441 3.504 3.249 MuHd_100 : 11.572 6.693 2.679 2.488 MuHd_105 : 2.805 4.253 2.625 1.413 Hmax_075 : 8.313 2.000 -0.167 2.370 Hmax_095 : 11.500 3.762 0.023 2.958 Hmax_100 : 10.200 5.200 0.889 3.430 Hmax_105 : 8.867 2.100 0.027 2.438 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9508 0.0492 DFMC : 0.9543 0.0457
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 235 PF3D7_0608500 MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEENSIFKIQQISEHIGIVYAGMP 80 GDFRVLLKRARKEAIRYSLQYGSEILVKELVKIIASIVQEFTQTGGVRPFGLSLLICGVDVYGYHLYQIDPSGCYFNWMA 160 TCVGKDYQNNMSFLEKRYNKDIEIEDAIHTAILTLKESYEGVLNEKNIEIGVAYDNKPFKILTQNEIKDYLIEIE 240 ................................................................................ 80 ................................................................................ 160 ........................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0608500 18 TFSPTGK|LV 0.080 . PF3D7_0608500 28 IEYALNR|VS 0.082 . PF3D7_0608500 39 SPALGIR|AK 0.114 . PF3D7_0608500 41 ALGIRAK|NG 0.062 . PF3D7_0608500 50 VIIATEK|KS 0.058 . PF3D7_0608500 51 IIATEKK|SP 0.119 . PF3D7_0608500 64 EENSIFK|IQ 0.065 . PF3D7_0608500 84 GMPGDFR|VL 0.065 . PF3D7_0608500 88 DFRVLLK|RA 0.064 . PF3D7_0608500 89 FRVLLKR|AR 0.182 . PF3D7_0608500 91 VLLKRAR|KE 0.069 . PF3D7_0608500 92 LLKRARK|EA 0.204 . PF3D7_0608500 96 ARKEAIR|YS 0.101 . PF3D7_0608500 108 GSEILVK|EL 0.072 . PF3D7_0608500 112 LVKELVK|II 0.064 . PF3D7_0608500 128 TQTGGVR|PF 0.098 . PF3D7_0608500 165 MATCVGK|DY 0.073 . PF3D7_0608500 176 NMSFLEK|RY 0.069 . PF3D7_0608500 177 MSFLEKR|YN 0.272 . PF3D7_0608500 180 LEKRYNK|DI 0.233 . PF3D7_0608500 196 TAILTLK|ES 0.067 . PF3D7_0608500 206 EGVLNEK|NI 0.063 . PF3D7_0608500 217 GVAYDNK|PF 0.060 . PF3D7_0608500 220 YDNKPFK|IL 0.080 . PF3D7_0608500 228 LTQNEIK|DY 0.069 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0608500 ATGGCAGATGGTGAATATAGTTTTTCTTTAACAACTTTTAGTCCAACAGGAAAATTAGTA CAAATTGAATATGCTCTTAATAGAGTATCTAGCAGTTCGCCAGCTTTAGGTATTAGAGCC AAGAATGGTGTGATAATTGCTACCGAAAAGAAAAGTCCAAATGAATTAATAGAAGAAAAT AGCATATTCAAAATACAACAAATAAGTGAACATATAGGTATTGTATATGCAGGAATGCCT GGAGATTTCCGTGTATTATTAAAAAGGGCAAGAAAAGAAGCCATAAGATATTCTTTACAA TATGGAAGTGAAATATTAGTAAAAGAATTAGTAAAAATAATTGCATCAATAGTTCAAGAA TTTACACAAACAGGTGGGGTAAGACCATTTGGTTTATCTTTATTAATATGTGGGGTTGAT GTATATGGATACCATTTATATCAAATCGATCCATCTGGATGTTATTTTAATTGGATGGCT ACATGTGTAGGAAAAGATTATCAAAACAATATGTCCTTTTTAGAAAAAAGATATAATAAA GACATCGAAATAGAAGATGCAATTCATACAGCTATTTTAACTTTAAAAGAAAGTTATGAA GGAGTATTGAATGAAAAAAATATTGAAATTGGTGTAGCCTATGATAATAAACCATTCAAG ATTTTAACACAAAATGAAATTAAAGATTATTTAATAGAAATAGAATAA
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  • Fasta :-

    MADGEYSFSLTTFSPTGKLVQIEYALNRVSSSSPALGIRAKNGVIIATEKKSPNELIEEN SIFKIQQISEHIGIVYAGMPGDFRVLLKRARKEAIRYSLQYGSEILVKELVKIIASIVQE FTQTGGVRPFGLSLLICGVDVYGYHLYQIDPSGCYFNWMATCVGKDYQNNMSFLEKRYNK DIEIEDAIHTAILTLKESYEGVLNEKNIEIGVAYDNKPFKILTQNEIKDYLIEIE

  • title: active site
  • coordinates: S33,E49,K51,K64,K165
No Results
No Results
IDSitePeptideScoreMethod
PF3D7_060850052 STEKKSPNEL0.994unsp

2270.t00228      MAL6P1.88      PFF0420c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India