PF3D7_0618600 | rhomboid protease ROM10

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0618600OTHER0.9999850.0000010.000014
No Results

  • Fasta :-

    >PF3D7_0618600 MSFRTRASNNFNNDYSHDSNLLINKYTTSFNNTFKRDIKFIQILFPSFDLYSITFFFSLL LIFLFVVIDIIFFNFSSPLFINEDVLKKIGINRFAVSNNYQYYKLVTATFLHSNIWNVLI NTYYLMNIGTIIEKNYGKAEYIIIMILSVACGNLLTCATSKCLDVQMGISPILSGFIGLF LQDIIVHYYELIDKLSIFGNFIFSFLSLYLMISIFSYNGNVLGNVGGILAGVSYPYIFKS DNFHGNDKKLKIIFAIFITLLLSGSLASLIVFKC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0618600.fa Sequence name : PF3D7_0618600 Sequence length : 274 VALUES OF COMPUTED PARAMETERS Coef20 : 3.917 CoefTot : 0.099 ChDiff : 4 ZoneTo : 13 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.741 3.018 0.513 1.007 MesoH : 0.816 1.304 0.043 0.545 MuHd_075 : 29.119 13.315 6.504 4.395 MuHd_095 : 20.940 13.385 6.670 3.883 MuHd_100 : 17.615 9.656 5.120 2.868 MuHd_105 : 12.199 6.153 3.637 2.140 Hmax_075 : 2.400 -0.900 -3.294 1.480 Hmax_095 : -8.200 -2.700 -4.121 0.700 Hmax_100 : -3.200 -3.600 -4.280 0.040 Hmax_105 : -4.500 -5.800 -4.547 -1.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9374 0.0626 DFMC : 0.8766 0.1234
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 274 PF3D7_0618600 MSFRTRASNNFNNDYSHDSNLLINKYTTSFNNTFKRDIKFIQILFPSFDLYSITFFFSLLLIFLFVVIDIIFFNFSSPLF 80 INEDVLKKIGINRFAVSNNYQYYKLVTATFLHSNIWNVLINTYYLMNIGTIIEKNYGKAEYIIIMILSVACGNLLTCATS 160 KCLDVQMGISPILSGFIGLFLQDIIVHYYELIDKLSIFGNFIFSFLSLYLMISIFSYNGNVLGNVGGILAGVSYPYIFKS 240 DNFHGNDKKLKIIFAIFITLLLSGSLASLIVFKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0618600 4 ---MSFR|TR 0.075 . PF3D7_0618600 6 -MSFRTR|AS 0.100 . PF3D7_0618600 25 SNLLINK|YT 0.067 . PF3D7_0618600 35 SFNNTFK|RD 0.066 . PF3D7_0618600 36 FNNTFKR|DI 0.386 . PF3D7_0618600 39 TFKRDIK|FI 0.180 . PF3D7_0618600 87 INEDVLK|KI 0.079 . PF3D7_0618600 88 NEDVLKK|IG 0.073 . PF3D7_0618600 93 KKIGINR|FA 0.109 . PF3D7_0618600 104 NNYQYYK|LV 0.080 . PF3D7_0618600 134 IGTIIEK|NY 0.069 . PF3D7_0618600 138 IEKNYGK|AE 0.068 . PF3D7_0618600 161 LTCATSK|CL 0.072 . PF3D7_0618600 194 YYELIDK|LS 0.056 . PF3D7_0618600 239 SYPYIFK|SD 0.070 . PF3D7_0618600 248 NFHGNDK|KL 0.063 . PF3D7_0618600 249 FHGNDKK|LK 0.075 . PF3D7_0618600 251 GNDKKLK|II 0.092 . PF3D7_0618600 273 ASLIVFK|C- 0.066 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0618600 ATGAGTTTTAGGACGAGAGCTAGTAATAATTTTAATAATGATTATTCCCATGATTCGAAT TTATTAATCAATAAATACACCACAAGTTTCAATAACACATTCAAGAGAGATATAAAATTT ATACAAATCTTATTTCCTTCTTTTGATCTATATTCAATTACTTTTTTCTTTTCCTTGCTG TTAATATTTCTATTTGTTGTTATAGATATAATCTTTTTTAATTTTAGTAGTCCCCTATTC ATAAATGAAGATGTGCTGAAAAAAATTGGTATAAATCGATTTGCCGTTTCAAATAATTAC CAATATTATAAATTAGTAACTGCCACCTTTCTCCATTCAAATATATGGAATGTCCTAATT AACACGTATTATTTAATGAATATAGGAACAATAATTGAAAAAAATTATGGAAAAGCAGAA TATATAATTATTATGATATTGAGTGTAGCTTGTGGAAATTTACTAACATGTGCTACTTCG AAATGTTTAGATGTACAAATGGGTATTAGTCCGATATTGTCGGGTTTTATTGGATTATTT TTACAAGATATTATTGTTCACTATTATGAGCTTATTGATAAACTAAGCATATTTGGAAAT TTCATATTTTCTTTTCTATCATTATATTTAATGATTTCTATATTTTCCTACAATGGAAAT GTACTTGGTAATGTTGGAGGTATACTAGCAGGTGTTAGTTACCCTTATATTTTTAAAAGC GATAATTTTCATGGGAACGATAAGAAGTTAAAAATTATATTTGCCATTTTTATTACTTTA TTGCTAAGCGGGTCCTTAGCTAGCTTAATAGTTTTCAAATGTTAA
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  • Fasta :-

    MSFRTRASNNFNNDYSHDSNLLINKYTTSFNNTFKRDIKFIQILFPSFDLYSITFFFSLL LIFLFVVIDIIFFNFSSPLFINEDVLKKIGINRFAVSNNYQYYKLVTATFLHSNIWNVLI NTYYLMNIGTIIEKNYGKAEYIIIMILSVACGNLLTCATSKCLDVQMGISPILSGFIGLF LQDIIVHYYELIDKLSIFGNFIFSFLSLYLMISIFSYNGNVLGNVGGILAGVSYPYIFKS DNFHGNDKKLKIIFAIFITLLLSGSLASLIVFKC

No Results
No Results
No Results

2270.t00461      MAL6P1.241      PFF0900c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India