PF3D7_0727400 | proteasome subunit alpha type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0727400OTHER0.9995240.0001670.000310
No Results

  • Fasta :-

    >PF3D7_0727400 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRISSTLIE KDSVEKLLSIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFSAASIGSAQEGAE LLLQENYKKDMTFEQAEILALTVLRQVMEDKLSTSNVEICAIKKSDQTFYKYNTDDISRI IDVLPSPVYPTIDMTA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0727400.fa Sequence name : PF3D7_0727400 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.827 CoefTot : 0.359 ChDiff : -8 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.506 0.243 0.551 MesoH : -0.781 0.465 -0.335 0.192 MuHd_075 : 26.581 14.114 5.973 6.050 MuHd_095 : 22.151 12.185 5.897 4.710 MuHd_100 : 16.896 13.422 4.329 4.470 MuHd_105 : 11.946 13.520 3.115 4.358 Hmax_075 : 3.063 1.575 -1.476 2.135 Hmax_095 : 11.800 5.700 0.856 3.450 Hmax_100 : 3.000 3.000 -1.467 2.890 Hmax_105 : -5.775 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8262 0.1738 DFMC : 0.8436 0.1564
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PF3D7_0727400 MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRISSTLIEKDSVEKLLSIDDHIGCAMSG 80 LMADARTLIDYARVECNHYKFIYNENINIKSCVELISELALDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEP 160 SGTNTRFSAASIGSAQEGAELLLQENYKKDMTFEQAEILALTVLRQVMEDKLSTSNVEICAIKKSDQTFYKYNTDDISRI 240 IDVLPSPVYPTIDMTA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0727400 5 --MFSTR|SE 0.129 . PF3D7_0727400 10 TRSEYDR|GV 0.202 . PF3D7_0727400 20 TFSPEGR|LF 0.104 . PF3D7_0727400 32 YALGAIK|LG 0.060 . PF3D7_0727400 52 VILASER|RI 0.076 . PF3D7_0727400 53 ILASERR|IS 0.138 . PF3D7_0727400 61 SSTLIEK|DS 0.064 . PF3D7_0727400 66 EKDSVEK|LL 0.061 . PF3D7_0727400 86 GLMADAR|TL 0.113 . PF3D7_0727400 93 TLIDYAR|VE 0.082 . PF3D7_0727400 100 VECNHYK|FI 0.078 . PF3D7_0727400 110 NENINIK|SC 0.076 . PF3D7_0727400 130 SNLSDSK|RK 0.053 . PF3D7_0727400 131 NLSDSKR|KK 0.256 . PF3D7_0727400 132 LSDSKRK|KI 0.093 . PF3D7_0727400 133 SDSKRKK|IM 0.149 . PF3D7_0727400 137 RKKIMSR|PF 0.131 . PF3D7_0727400 150 LIGGVDK|NG 0.057 . PF3D7_0727400 166 PSGTNTR|FS 0.105 . PF3D7_0727400 188 LLQENYK|KD 0.068 . PF3D7_0727400 189 LQENYKK|DM 0.104 . PF3D7_0727400 205 LALTVLR|QV 0.100 . PF3D7_0727400 211 RQVMEDK|LS 0.061 . PF3D7_0727400 223 VEICAIK|KS 0.060 . PF3D7_0727400 224 EICAIKK|SD 0.101 . PF3D7_0727400 231 SDQTFYK|YN 0.080 . PF3D7_0727400 239 NTDDISR|II 0.075 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0727400 ATGTTTTCAACAAGGAGTGAATATGATAGGGGAGTAAATACCTTTTCTCCTGAAGGACGA CTTTTTCAAGTTGAATATGCCTTAGGGGCGATAAAACTTGGTAGTACGGCTGTAGGTATT TGTGTGAACGATGGAGTGATATTAGCATCCGAGAGAAGAATTTCCTCAACACTTATCGAA AAAGATTCCGTTGAGAAATTATTATCGATAGATGATCATATTGGTTGTGCGATGAGTGGT TTGATGGCTGATGCAAGAACATTAATTGATTATGCAAGAGTCGAGTGTAATCATTATAAA TTTATTTATAATGAGAATATAAATATAAAGTCATGTGTAGAACTAATATCTGAATTAGCT TTAGATTTTTCTAATTTGTCTGATAGTAAAAGAAAAAAGATTATGAGCAGACCATTCGGA GTTGCTTTATTAATTGGTGGTGTCGATAAAAACGGACCATGTTTATGGTATACTGAACCT TCAGGAACCAATACAAGATTTTCAGCAGCTTCTATAGGTTCAGCACAAGAAGGAGCAGAA TTATTATTACAAGAAAATTATAAAAAAGATATGACATTTGAACAAGCTGAAATTTTAGCT CTTACGGTTTTAAGACAAGTTATGGAAGATAAACTTTCAACATCAAATGTTGAAATATGT GCTATAAAAAAATCAGATCAAACTTTTTATAAATATAATACGGATGATATATCTAGAATT ATTGACGTATTACCATCACCCGTTTATCCCACCATAGACATGACAGCATAG
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  • Fasta :-

    MFSTRSEYDRGVNTFSPEGRLFQVEYALGAIKLGSTAVGICVNDGVILASERRISSTLIE KDSVEKLLSIDDHIGCAMSGLMADARTLIDYARVECNHYKFIYNENINIKSCVELISELA LDFSNLSDSKRKKIMSRPFGVALLIGGVDKNGPCLWYTEPSGTNTRFSAASIGSAQEGAE LLLQENYKKDMTFEQAEILALTVLRQVMEDKLSTSNVEICAIKKSDQTFYKYNTDDISRI IDVLPSPVYPTIDMTA

  • title: active site
  • coordinates: S35,E51,R53,K66,S174
No Results
No Results
IDSitePeptideScoreMethod
PF3D7_072740055 SERRISSTLI0.994unsp

PF07_0112      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India