PF3D7_0803800 | proteasome subunit beta type-4

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0803800OTHER0.9910260.0005470.008427
No Results

  • Fasta :-

    >PF3D7_0803800 MTLGPVVTGTSVIAIKYKHGIMIAADRKASYGSYAKFQNVERIFKINNKTVMGFSGELAD AQYLHELLTRKNINNLSEKKRKEDMYTPQHYHSYVSRVFYVRKNRIDPLFNNIIIAGINS QKYDNNDDNVLLYTNKNNDDEQNEYKNNEEYKEIHKDDLYIGFVDMHGTNFCDDYITTGY ARYFALTLLRDHYKDNMTEEEARILINECLRILYFRDATSSNFIQIVKVTSKGVEYEEPY ILPCVLNSADYVYPSTLLPPAGCMW
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0803800.fa Sequence name : PF3D7_0803800 Sequence length : 265 VALUES OF COMPUTED PARAMETERS Coef20 : 3.602 CoefTot : -2.624 ChDiff : -4 ZoneTo : 56 KR : 8 DE : 2 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.094 0.074 0.469 MesoH : -1.002 0.106 -0.426 0.138 MuHd_075 : 35.926 16.324 8.406 7.275 MuHd_095 : 33.946 21.067 9.211 7.266 MuHd_100 : 39.320 25.455 11.066 9.204 MuHd_105 : 41.175 25.328 11.545 9.841 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 5.863 9.363 -0.724 3.728 Hmax_100 : 14.600 17.800 1.706 6.420 Hmax_105 : 13.825 14.963 1.420 5.574 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8146 0.1854 DFMC : 0.7513 0.2487
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 265 PF3D7_0803800 MTLGPVVTGTSVIAIKYKHGIMIAADRKASYGSYAKFQNVERIFKINNKTVMGFSGELADAQYLHELLTRKNINNLSEKK 80 RKEDMYTPQHYHSYVSRVFYVRKNRIDPLFNNIIIAGINSQKYDNNDDNVLLYTNKNNDDEQNEYKNNEEYKEIHKDDLY 160 IGFVDMHGTNFCDDYITTGYARYFALTLLRDHYKDNMTEEEARILINECLRILYFRDATSSNFIQIVKVTSKGVEYEEPY 240 ILPCVLNSADYVYPSTLLPPAGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0803800 16 TSVIAIK|YK 0.077 . PF3D7_0803800 18 VIAIKYK|HG 0.070 . PF3D7_0803800 27 IMIAADR|KA 0.098 . PF3D7_0803800 28 MIAADRK|AS 0.088 . PF3D7_0803800 36 SYGSYAK|FQ 0.062 . PF3D7_0803800 42 KFQNVER|IF 0.087 . PF3D7_0803800 45 NVERIFK|IN 0.111 . PF3D7_0803800 49 IFKINNK|TV 0.067 . PF3D7_0803800 70 LHELLTR|KN 0.079 . PF3D7_0803800 71 HELLTRK|NI 0.065 . PF3D7_0803800 79 INNLSEK|KR 0.061 . PF3D7_0803800 80 NNLSEKK|RK 0.083 . PF3D7_0803800 81 NLSEKKR|KE 0.313 . PF3D7_0803800 82 LSEKKRK|ED 0.090 . PF3D7_0803800 97 YHSYVSR|VF 0.095 . PF3D7_0803800 102 SRVFYVR|KN 0.082 . PF3D7_0803800 103 RVFYVRK|NR 0.080 . PF3D7_0803800 105 FYVRKNR|ID 0.134 . PF3D7_0803800 122 AGINSQK|YD 0.062 . PF3D7_0803800 136 VLLYTNK|NN 0.065 . PF3D7_0803800 146 DEQNEYK|NN 0.068 . PF3D7_0803800 152 KNNEEYK|EI 0.083 . PF3D7_0803800 156 EYKEIHK|DD 0.058 . PF3D7_0803800 182 ITTGYAR|YF 0.073 . PF3D7_0803800 190 FALTLLR|DH 0.085 . PF3D7_0803800 194 LLRDHYK|DN 0.100 . PF3D7_0803800 203 MTEEEAR|IL 0.083 . PF3D7_0803800 211 LINECLR|IL 0.077 . PF3D7_0803800 216 LRILYFR|DA 0.156 . PF3D7_0803800 228 NFIQIVK|VT 0.067 . PF3D7_0803800 232 IVKVTSK|GV 0.104 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0803800 ATGACCTTAGGCCCAGTAGTAACAGGTACATCCGTGATAGCTATAAAATACAAACACGGC ATAATGATTGCAGCAGATAGAAAAGCTAGCTATGGTAGTTATGCAAAATTTCAGAATGTC GAAAGAATTTTTAAAATAAATAATAAGACGGTTATGGGTTTTAGTGGTGAGCTAGCTGAT GCTCAATATTTGCATGAGTTACTTACACGTAAGAATATTAATAATTTAAGTGAGAAGAAA AGAAAAGAAGATATGTATACACCCCAACATTACCATTCGTATGTAAGTAGAGTATTTTAT GTTAGAAAAAATAGGATAGATCCCTTATTTAATAATATAATTATAGCAGGAATAAATTCA CAAAAATATGATAATAATGATGATAATGTTTTATTATATACAAATAAAAATAATGATGAT GAACAGAATGAATATAAAAACAATGAAGAATATAAAGAAATTCATAAAGATGATTTATAT ATTGGATTTGTAGATATGCATGGAACAAATTTTTGTGATGATTATATTACTACAGGATAT GCTAGATATTTCGCTCTCACATTATTAAGAGATCATTATAAAGATAATATGACAGAAGAA GAGGCACGAATATTAATAAATGAATGCTTAAGAATTTTATATTTTAGAGATGCTACTTCA TCAAATTTTATACAAATCGTTAAGGTTACAAGTAAAGGTGTTGAATATGAAGAACCATAT ATTCTTCCATGTGTATTAAATTCAGCTGATTATGTCTACCCTTCAACATTACTTCCACCT GCTGGATGTATGTGGTGA
  • Download Fasta

  • Fasta :-

    MTLGPVVTGTSVIAIKYKHGIMIAADRKASYGSYAKFQNVERIFKINNKTVMGFSGELAD AQYLHELLTRKNINNLSEKKRKEDMYTPQHYHSYVSRVFYVRKNRIDPLFNNIIIAGINS QKYDNNDDNVLLYTNKNNDDEQNEYKNNEEYKEIHKDDLYIGFVDMHGTNFCDDYITTGY ARYFALTLLRDHYKDNMTEEEARILINECLRILYFRDATSSNFIQIVKVTSKGVEYEEPY ILPCVLNSADYVYPSTLLPPAGCMW

No Results
No Results
No Results

MAL8P1.142      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India