PF3D7_0912900 | 26S proteasome regulatory subunit RPN8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020020      GO:0000502      

  • Curated_GO_Components:  food vacuole      proteasome complex      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0912900OTHER0.9997760.0000500.000173
No Results

  • Fasta :-

    >PF3D7_0912900 MDNDIFEKNRNVLERIYLNKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HITNSYALPFEEDIKDINIFYIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAIHENKFRKTFIHIPVKIGAFEAEE VGVEFLLKELKSVSTSTLATKVGDKLSSLKSLIAKLYEISAYLNDILNGNIEMNIKILYN LQNVFSLLPDIENVDLVQAFMVKNNDLMLNIYIGSITRSVIALHNLINNKIENKLNSEKK KSLENDIEKDKIKDKEKEKEKEKDKEKENDKAKKDKKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0912900.fa Sequence name : PF3D7_0912900 Sequence length : 338 VALUES OF COMPUTED PARAMETERS Coef20 : 3.598 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 1.488 0.094 0.513 MesoH : -0.670 0.519 -0.428 0.271 MuHd_075 : 11.237 5.755 2.464 3.409 MuHd_095 : 36.931 23.251 9.725 7.857 MuHd_100 : 32.941 22.225 9.169 6.861 MuHd_105 : 26.923 19.129 7.927 5.288 Hmax_075 : -8.837 1.867 -4.256 1.908 Hmax_095 : 1.225 9.275 -1.098 3.780 Hmax_100 : 1.300 12.800 -0.578 4.520 Hmax_105 : 1.300 12.800 -0.578 4.520 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8105 0.1895 DFMC : 0.9406 0.0594
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 338 PF3D7_0912900 MDNDIFEKNRNVLERIYLNKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVVHITNSYALPFEEDIKDINIF 80 YIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFINEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAIHEN 160 KFRKTFIHIPVKIGAFEAEEVGVEFLLKELKSVSTSTLATKVGDKLSSLKSLIAKLYEISAYLNDILNGNIEMNIKILYN 240 LQNVFSLLPDIENVDLVQAFMVKNNDLMLNIYIGSITRSVIALHNLINNKIENKLNSEKKKSLENDIEKDKIKDKEKEKE 320 KEKDKEKENDKAKKDKKN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0912900 8 DNDIFEK|NR 0.059 . PF3D7_0912900 10 DIFEKNR|NV 0.089 . PF3D7_0912900 15 NRNVLER|IY 0.122 . PF3D7_0912900 20 ERIYLNK|HV 0.079 . PF3D7_0912900 38 VVDHYNR|IA 0.081 . PF3D7_0912900 44 RIASNTK|KR 0.055 . PF3D7_0912900 45 IASNTKK|RV 0.151 . PF3D7_0912900 46 ASNTKKR|VL 0.429 . PF3D7_0912900 55 GTILGEK|ID 0.062 . PF3D7_0912900 75 PFEEDIK|DI 0.062 . PF3D7_0912900 95 NLFNMIR|KI 0.089 . PF3D7_0912900 96 LFNMIRK|IN 0.084 . PF3D7_0912900 100 IRKINTR|EK 0.105 . PF3D7_0912900 102 KINTREK|IV 0.114 . PF3D7_0912900 114 TTGSNIK|PN 0.068 . PF3D7_0912900 126 INEIFYK|YH 0.072 . PF3D7_0912900 155 AYVAIEK|AI 0.063 . PF3D7_0912900 161 KAIHENK|FR 0.070 . PF3D7_0912900 163 IHENKFR|KT 0.111 . PF3D7_0912900 164 HENKFRK|TF 0.107 . PF3D7_0912900 172 FIHIPVK|IG 0.057 . PF3D7_0912900 188 GVEFLLK|EL 0.061 . PF3D7_0912900 191 FLLKELK|SV 0.101 . PF3D7_0912900 201 TSTLATK|VG 0.057 . PF3D7_0912900 205 ATKVGDK|LS 0.054 . PF3D7_0912900 210 DKLSSLK|SL 0.082 . PF3D7_0912900 215 LKSLIAK|LY 0.074 . PF3D7_0912900 236 NIEMNIK|IL 0.061 . PF3D7_0912900 263 VQAFMVK|NN 0.064 . PF3D7_0912900 278 YIGSITR|SV 0.157 . PF3D7_0912900 290 HNLINNK|IE 0.058 . PF3D7_0912900 294 NNKIENK|LN 0.065 . PF3D7_0912900 299 NKLNSEK|KK 0.062 . PF3D7_0912900 300 KLNSEKK|KS 0.093 . PF3D7_0912900 301 LNSEKKK|SL 0.274 . PF3D7_0912900 309 LENDIEK|DK 0.068 . PF3D7_0912900 311 NDIEKDK|IK 0.065 . PF3D7_0912900 313 IEKDKIK|DK 0.087 . PF3D7_0912900 315 KDKIKDK|EK 0.069 . PF3D7_0912900 317 KIKDKEK|EK 0.072 . PF3D7_0912900 319 KDKEKEK|EK 0.065 . PF3D7_0912900 321 KEKEKEK|EK 0.067 . PF3D7_0912900 323 KEKEKEK|DK 0.079 . PF3D7_0912900 325 KEKEKDK|EK 0.061 . PF3D7_0912900 327 KEKDKEK|EN 0.072 . PF3D7_0912900 331 KEKENDK|AK 0.062 . PF3D7_0912900 333 KENDKAK|KD 0.073 . PF3D7_0912900 334 ENDKAKK|DK 0.130 . PF3D7_0912900 336 DKAKKDK|KN 0.081 . PF3D7_0912900 337 KAKKDKK|N- 0.109 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0912900 ATGGATAATGATATTTTTGAAAAAAACAGAAATGTACTTGAAAGAATATATTTAAACAAA CATGTAGTTGTACATCCAATAGTTTTACTATCAGTTGTTGATCACTATAATCGTATTGCA AGTAATACAAAAAAGAGAGTCTTGGGAACAATTCTTGGAGAAAAAATTGATGGTGTAGTA CATATTACCAACAGCTATGCACTTCCTTTTGAAGAAGATATAAAAGATATCAACATTTTT TATATTGATGATAATTATAATGAAAATCTTTTTAATATGATAAGAAAAATTAATACAAGA GAAAAAATTGTCGGATGGTATACTACAGGATCCAATATTAAACCAAATGATATTTTTATT AATGAAATCTTTTATAAATATCATCACGCACCTATATTCCTACTTGTAAATGTTCATACA GATCAAAGCATATTTCCAGTTAATGCATACGTAGCTATTGAAAAAGCTATACATGAAAAT AAATTCAGAAAAACATTCATACATATACCAGTTAAAATAGGAGCTTTTGAGGCTGAAGAA GTAGGTGTTGAATTTTTACTAAAAGAATTAAAGAGCGTCTCCACTTCAACCTTAGCCACA AAAGTAGGTGATAAGTTATCGTCCTTAAAAAGTTTGATAGCAAAATTATACGAAATATCA GCTTATTTGAATGATATATTAAATGGGAATATTGAAATGAATATAAAAATATTATACAAT TTACAAAATGTGTTTAGTCTTTTACCGGATATTGAAAACGTCGATTTAGTACAGGCATTT ATGGTTAAGAATAATGACTTAATGTTAAATATATATATAGGTAGTATAACACGATCTGTT ATTGCTCTTCACAATTTAATCAATAATAAAATTGAGAATAAATTGAATTCGGAAAAAAAA AAATCTTTAGAAAATGATATAGAAAAGGACAAAATAAAAGATAAGGAAAAAGAAAAGGAA AAGGAAAAAGATAAGGAAAAAGAAAATGATAAGGCAAAAAAGGACAAGAAAAATTAA
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  • Fasta :-

    MDNDIFEKNRNVLERIYLNKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HITNSYALPFEEDIKDINIFYIDDNYNENLFNMIRKINTREKIVGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTDQSIFPVNAYVAIEKAIHENKFRKTFIHIPVKIGAFEAEE VGVEFLLKELKSVSTSTLATKVGDKLSSLKSLIAKLYEISAYLNDILNGNIEMNIKILYN LQNVFSLLPDIENVDLVQAFMVKNNDLMLNIYIGSITRSVIALHNLINNKIENKLNSEKK KSLENDIEKDKIKDKEKEKEKEKDKEKENDKAKKDKKN

    No Results
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IDSitePeptideScoreMethod
PF3D7_0912900302 SEKKKSLEND0.996unsp

PFI0630w      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India