PF3D7_0918300 | eukaryotic translation initiation factor 3 subunit F, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0918300OTHER0.9994980.0000550.000448
No Results

  • Fasta :-

    >PF3D7_0918300 MSINRYNYKTMNSLLKDKIPQHFDILPHTTIKCIIHPSVIFTILDAYLRRDEDQTHVIGT LMGSVIDTNLVEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHTPLNEPIHLLVDASLESGFLNIKAYVQLPISLVKD YFVHFHEIQTELLPCNVERADVSLVKGNIHAHKDNHTNNLEHNHNNNQIDMNELSLKKLL IMLKQCKSYVQDVIDQKKKGNISVGRYLHKVLSNDTFLTLEKFDSINESVLQDNLMISYL SNLANLQFLIAEKLNSSSLQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0918300.fa Sequence name : PF3D7_0918300 Sequence length : 320 VALUES OF COMPUTED PARAMETERS Coef20 : 3.797 CoefTot : -0.339 ChDiff : -7 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.018 1.365 0.063 0.522 MesoH : -0.435 0.291 -0.420 0.247 MuHd_075 : 15.572 9.470 4.070 1.890 MuHd_095 : 28.610 18.000 7.489 6.778 MuHd_100 : 21.726 14.275 5.624 5.701 MuHd_105 : 15.920 9.644 4.100 4.325 Hmax_075 : -2.567 3.500 -2.142 0.642 Hmax_095 : -0.300 5.900 -2.712 1.910 Hmax_100 : -1.600 3.100 -1.416 1.450 Hmax_105 : -5.862 -0.233 -3.285 0.850 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7784 0.2216 DFMC : 0.7493 0.2507
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 320 PF3D7_0918300 MSINRYNYKTMNSLLKDKIPQHFDILPHTTIKCIIHPSVIFTILDAYLRRDEDQTHVIGTLMGSVIDTNLVEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHTPLNEPIHLLVDASL 160 ESGFLNIKAYVQLPISLVKDYFVHFHEIQTELLPCNVERADVSLVKGNIHAHKDNHTNNLEHNHNNNQIDMNELSLKKLL 240 IMLKQCKSYVQDVIDQKKKGNISVGRYLHKVLSNDTFLTLEKFDSINESVLQDNLMISYLSNLANLQFLIAEKLNSSSLQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0918300 5 --MSINR|YN 0.093 . PF3D7_0918300 9 INRYNYK|TM 0.067 . PF3D7_0918300 16 TMNSLLK|DK 0.085 . PF3D7_0918300 18 NSLLKDK|IP 0.056 . PF3D7_0918300 32 LPHTTIK|CI 0.067 . PF3D7_0918300 49 ILDAYLR|RD 0.082 . PF3D7_0918300 50 LDAYLRR|DE 0.192 . PF3D7_0918300 80 SDCFVDK|HS 0.072 . PF3D7_0918300 93 GFLQIIK|DH 0.063 . PF3D7_0918300 103 ETMYELK|QK 0.065 . PF3D7_0918300 105 MYELKQK|IR 0.060 . PF3D7_0918300 107 ELKQKIR|PR 0.119 . PF3D7_0918300 109 KQKIRPR|DQ 0.125 . PF3D7_0918300 134 AVHGWFK|EH 0.057 . PF3D7_0918300 141 EHNSISK|FY 0.065 . PF3D7_0918300 168 SGFLNIK|AY 0.058 . PF3D7_0918300 179 LPISLVK|DY 0.079 . PF3D7_0918300 199 LPCNVER|AD 0.096 . PF3D7_0918300 206 ADVSLVK|GN 0.066 . PF3D7_0918300 213 GNIHAHK|DN 0.087 . PF3D7_0918300 237 MNELSLK|KL 0.068 . PF3D7_0918300 238 NELSLKK|LL 0.067 . PF3D7_0918300 244 KLLIMLK|QC 0.058 . PF3D7_0918300 247 IMLKQCK|SY 0.076 . PF3D7_0918300 257 QDVIDQK|KK 0.062 . PF3D7_0918300 258 DVIDQKK|KG 0.082 . PF3D7_0918300 259 VIDQKKK|GN 0.112 . PF3D7_0918300 266 GNISVGR|YL 0.161 . PF3D7_0918300 270 VGRYLHK|VL 0.065 . PF3D7_0918300 282 TFLTLEK|FD 0.067 . PF3D7_0918300 313 QFLIAEK|LN 0.060 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0918300 ATGAGTATTAATCGATATAATTATAAAACAATGAATAGTTTATTGAAGGATAAAATCCCT CAACATTTTGACATCTTACCTCATACGACGATAAAATGTATTATTCATCCTTCTGTTATT TTTACCATTTTAGATGCATATTTAAGAAGAGATGAAGATCAAACGCATGTGATAGGAACA TTAATGGGTTCAGTGATTGATACGAACCTGGTTGAAATTTCGGATTGTTTTGTCGATAAG CATTCATTAAATGAAGGAGGTTTTTTACAAATAATTAAAGATCACCATGAAACGATGTAT GAGTTGAAACAAAAAATACGTCCAAGAGATCAAGTTGTTGGATGGTTTTGTTCAGGTTCT GAATTATCTGAACTTTCATGTGCTGTACATGGATGGTTCAAAGAACACAATTCTATATCA AAATTTTATCCACATACCCCTTTGAATGAACCTATACATTTATTAGTTGATGCTAGTTTA GAAAGTGGTTTTTTAAATATTAAAGCATATGTTCAATTACCCATATCCTTAGTGAAGGAT TATTTTGTACATTTCCATGAAATACAAACAGAATTATTACCATGTAATGTTGAAAGAGCT GATGTTTCATTAGTTAAAGGAAATATACATGCACATAAGGATAACCATACAAATAATTTA GAACATAATCATAATAATAACCAAATAGATATGAATGAATTATCATTAAAAAAGTTATTA ATTATGTTAAAACAATGTAAATCATATGTTCAAGATGTTATTGATCAAAAAAAAAAAGGA AATATTAGTGTTGGAAGATATTTACATAAAGTATTATCTAACGATACTTTCTTAACCTTA GAAAAGTTTGATTCAATTAACGAAAGTGTTTTACAAGATAATCTAATGATTTCCTACTTA TCAAATTTGGCAAATTTACAATTCTTAATTGCGGAAAAGTTGAACTCATCATCTTTACAA TGA
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  • Fasta :-

    MSINRYNYKTMNSLLKDKIPQHFDILPHTTIKCIIHPSVIFTILDAYLRRDEDQTHVIGT LMGSVIDTNLVEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHTPLNEPIHLLVDASLESGFLNIKAYVQLPISLVKD YFVHFHEIQTELLPCNVERADVSLVKGNIHAHKDNHTNNLEHNHNNNQIDMNELSLKKLL IMLKQCKSYVQDVIDQKKKGNISVGRYLHKVLSNDTFLTLEKFDSINESVLQDNLMISYL SNLANLQFLIAEKLNSSSLQ

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PFI0895c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India