PF3D7_0931800 | proteasome subunit beta type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0931800OTHER0.9987040.0012840.000012
No Results

  • Fasta :-

    >PF3D7_0931800 MDVVNESQIKCHEEKSWDDEYDIKTPISDGTTIIGIIYDNGVMLACDSRTSSGTFISNKC SRKINRINENLYVCRSGASAHSQKIIEIIKHYCVSMKNENRKKGRFHEGETIYDETTYDE EIDIDSINYLDYNNNNDNNLVTKNKYFYEDKFNDYNPLVENVAHITKKIIYTNNNFLSCA LIFGGYDKIKKQQLYAVNLNGSIIEKHDFAVSGSGSIYIQSYLQDKYKKFMTKKECFNLI LNCVKYAMHNDNSSGGLIRIVNITKSFVEEFTVVNTQMNFQY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0931800.fa Sequence name : PF3D7_0931800 Sequence length : 282 VALUES OF COMPUTED PARAMETERS Coef20 : 2.827 CoefTot : 0.000 ChDiff : -4 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.912 1.253 0.181 0.545 MesoH : -0.931 0.035 -0.438 0.154 MuHd_075 : 11.168 5.435 1.905 3.164 MuHd_095 : 30.696 11.634 7.711 2.755 MuHd_100 : 14.071 6.532 4.263 0.086 MuHd_105 : 10.303 7.684 3.745 2.320 Hmax_075 : -4.500 1.500 -3.078 1.920 Hmax_095 : -2.200 -0.400 -3.870 0.930 Hmax_100 : -12.700 -0.800 -4.569 -0.570 Hmax_105 : -6.900 1.800 -3.076 1.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9650 0.0350 DFMC : 0.9856 0.0144
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 282 PF3D7_0931800 MDVVNESQIKCHEEKSWDDEYDIKTPISDGTTIIGIIYDNGVMLACDSRTSSGTFISNKCSRKINRINENLYVCRSGASA 80 HSQKIIEIIKHYCVSMKNENRKKGRFHEGETIYDETTYDEEIDIDSINYLDYNNNNDNNLVTKNKYFYEDKFNDYNPLVE 160 NVAHITKKIIYTNNNFLSCALIFGGYDKIKKQQLYAVNLNGSIIEKHDFAVSGSGSIYIQSYLQDKYKKFMTKKECFNLI 240 LNCVKYAMHNDNSSGGLIRIVNITKSFVEEFTVVNTQMNFQY 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0931800 10 VNESQIK|CH 0.059 . PF3D7_0931800 15 IKCHEEK|SW 0.121 . PF3D7_0931800 24 DDEYDIK|TP 0.060 . PF3D7_0931800 49 MLACDSR|TS 0.088 . PF3D7_0931800 59 GTFISNK|CS 0.067 . PF3D7_0931800 62 ISNKCSR|KI 0.119 . PF3D7_0931800 63 SNKCSRK|IN 0.104 . PF3D7_0931800 66 CSRKINR|IN 0.104 . PF3D7_0931800 75 ENLYVCR|SG 0.107 . PF3D7_0931800 84 ASAHSQK|II 0.089 . PF3D7_0931800 90 KIIEIIK|HY 0.064 . PF3D7_0931800 97 HYCVSMK|NE 0.066 . PF3D7_0931800 101 SMKNENR|KK 0.095 . PF3D7_0931800 102 MKNENRK|KG 0.095 . PF3D7_0931800 103 KNENRKK|GR 0.130 . PF3D7_0931800 105 ENRKKGR|FH 0.165 . PF3D7_0931800 143 DNNLVTK|NK 0.071 . PF3D7_0931800 145 NLVTKNK|YF 0.067 . PF3D7_0931800 151 KYFYEDK|FN 0.066 . PF3D7_0931800 167 NVAHITK|KI 0.063 . PF3D7_0931800 168 VAHITKK|II 0.132 . PF3D7_0931800 188 IFGGYDK|IK 0.065 . PF3D7_0931800 190 GGYDKIK|KQ 0.062 . PF3D7_0931800 191 GYDKIKK|QQ 0.076 . PF3D7_0931800 206 NGSIIEK|HD 0.072 . PF3D7_0931800 226 QSYLQDK|YK 0.064 . PF3D7_0931800 228 YLQDKYK|KF 0.075 . PF3D7_0931800 229 LQDKYKK|FM 0.124 . PF3D7_0931800 233 YKKFMTK|KE 0.060 . PF3D7_0931800 234 KKFMTKK|EC 0.097 . PF3D7_0931800 245 LILNCVK|YA 0.071 . PF3D7_0931800 259 SSGGLIR|IV 0.117 . PF3D7_0931800 265 RIVNITK|SF 0.075 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0931800 ATGGATGTTGTTAATGAATCTCAAATAAAATGTCATGAAGAAAAATCTTGGGATGATGAA TATGATATAAAAACACCCATATCAGACGGTACGACAATTATTGGTATAATTTATGATAAC GGAGTTATGTTAGCTTGTGATAGTAGAACATCATCAGGTACATTTATTAGTAATAAATGT TCAAGAAAAATAAATCGTATAAATGAAAATTTATATGTTTGTCGAAGTGGAGCCTCAGCA CATAGTCAGAAAATTATTGAAATCATAAAACATTATTGTGTATCTATGAAAAATGAAAAC AGGAAAAAAGGTAGATTCCATGAAGGAGAAACAATTTATGATGAAACTACATATGATGAA GAAATAGATATTGATTCCATCAATTATTTAGATTATAATAATAATAATGATAATAATTTA GTTACAAAAAATAAATATTTCTATGAAGATAAATTTAATGATTATAATCCACTTGTTGAA AATGTAGCACATATTACTAAAAAAATTATTTATACTAATAATAACTTCTTATCATGTGCA CTCATATTTGGTGGCTATGATAAAATCAAAAAACAACAATTATATGCTGTTAATTTAAAT GGTAGTATTATAGAAAAACATGATTTTGCCGTTAGCGGTAGCGGAAGTATATATATACAA TCATATCTACAAGATAAATATAAAAAATTTATGACCAAAAAAGAATGCTTCAATCTAATT TTGAACTGTGTTAAATATGCTATGCATAATGATAATAGTAGTGGAGGCTTAATTCGTATT GTTAACATAACCAAATCGTTTGTTGAAGAATTTACTGTTGTAAATACACAAATGAATTTT CAATATTAA
  • Download Fasta

  • Fasta :-

    MDVVNESQIKCHEEKSWDDEYDIKTPISDGTTIIGIIYDNGVMLACDSRTSSGTFISNKC SRKINRINENLYVCRSGASAHSQKIIEIIKHYCVSMKNENRKKGRFHEGETIYDETTYDE EIDIDSINYLDYNNNNDNNLVTKNKYFYEDKFNDYNPLVENVAHITKKIIYTNNNFLSCA LIFGGYDKIKKQQLYAVNLNGSIIEKHDFAVSGSGSIYIQSYLQDKYKKFMTKKECFNLI LNCVKYAMHNDNSSGGLIRIVNITKSFVEEFTVVNTQMNFQY

  • title: active site
  • coordinates: T31,D47,R49,K63
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_093180016 SHEEKSWDDE0.99unspPF3D7_093180082 SASAHSQKII0.992unsp

PFI1545c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India