PF3D7_0933600 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_0933600mTP0.0343170.0000170.965666CS pos: 27-28. SNY-ST. Pr: 0.8860
No Results

  • Fasta :-

    >PF3D7_0933600 MWKRKVVNVVSCIRKNSRPFLGYRSNYSTYNLPQEIINQPITRVTELSNKLKVATVHTNC EIPTIGLWISSGSKYENKKNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAR EQTGYYCKCFKNDIKWCIELLSDILSNSIFDDNLIELEKHVILREMEEVEKCKDEVIFDK LHMTAFRDHPLGFTILGPEENIKNMKRKDIIDYINKNYTSDRMVLCAVGDVQHEEIVKLA ELNFNHLKTQEQKNNSIIHNNNDKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWNSPDSI TFMLMQCIIGTYKKNEEGILPGKLSANRTVNNICNKMTVGCADYFTSFNTCYNNTGLFGF YVQCDEIAVEHALGELMFGVTSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEVSRQ LLVYGRKISLAEFILRLNEIDTEEVKRVAWKYLHDRDIAVAAIGALHGMPQYIDLRQKTY WLRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_0933600.fa Sequence name : PF3D7_0933600 Sequence length : 484 VALUES OF COMPUTED PARAMETERS Coef20 : 4.715 CoefTot : -1.025 ChDiff : -5 ZoneTo : 34 KR : 7 DE : 0 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.182 1.182 0.080 0.519 MesoH : -0.291 0.359 -0.292 0.248 MuHd_075 : 38.955 17.007 9.887 7.737 MuHd_095 : 32.067 23.444 8.360 7.828 MuHd_100 : 43.121 29.854 11.083 10.750 MuHd_105 : 47.315 29.361 12.137 11.497 Hmax_075 : 9.500 13.200 2.350 3.830 Hmax_095 : 7.000 16.625 0.446 3.911 Hmax_100 : 18.000 22.900 4.065 6.820 Hmax_105 : 17.733 22.283 4.016 6.673 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0522 0.9478 DFMC : 0.0590 0.9410 This protein is probably imported in mitochondria. f(Ser) = 0.1176 f(Arg) = 0.1176 CMi = 0.50125 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 484 PF3D7_0933600 MWKRKVVNVVSCIRKNSRPFLGYRSNYSTYNLPQEIINQPITRVTELSNKLKVATVHTNCEIPTIGLWISSGSKYENKKN 80 NGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAREQTGYYCKCFKNDIKWCIELLSDILSNSIFDDNLIELEKH 160 VILREMEEVEKCKDEVIFDKLHMTAFRDHPLGFTILGPEENIKNMKRKDIIDYINKNYTSDRMVLCAVGDVQHEEIVKLA 240 ELNFNHLKTQEQKNNSIIHNNNDKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWNSPDSITFMLMQCIIGTYKKNEEGIL 320 PGKLSANRTVNNICNKMTVGCADYFTSFNTCYNNTGLFGFYVQCDEIAVEHALGELMFGVTSLSYSITDEEVELAKIHLK 400 TQLISMFESSSTLAEEVSRQLLVYGRKISLAEFILRLNEIDTEEVKRVAWKYLHDRDIAVAAIGALHGMPQYIDLRQKTY 480 WLRY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_0933600 3 ----MWK|RK 0.057 . PF3D7_0933600 4 ---MWKR|KV 0.262 . PF3D7_0933600 5 --MWKRK|VV 0.114 . PF3D7_0933600 14 NVVSCIR|KN 0.071 . PF3D7_0933600 15 VVSCIRK|NS 0.087 . PF3D7_0933600 18 CIRKNSR|PF 0.086 . PF3D7_0933600 24 RPFLGYR|SN 0.107 . PF3D7_0933600 43 INQPITR|VT 0.095 . PF3D7_0933600 50 VTELSNK|LK 0.056 . PF3D7_0933600 52 ELSNKLK|VA 0.082 . PF3D7_0933600 74 WISSGSK|YE 0.065 . PF3D7_0933600 78 GSKYENK|KN 0.070 . PF3D7_0933600 79 SKYENKK|NN 0.120 . PF3D7_0933600 93 LEHMIFK|GT 0.074 . PF3D7_0933600 96 MIFKGTK|KR 0.062 . PF3D7_0933600 97 IFKGTKK|RN 0.095 . PF3D7_0933600 98 FKGTKKR|NR 0.218 . PF3D7_0933600 100 GTKKRNR|IQ 0.090 . PF3D7_0933600 105 NRIQLEK|EI 0.077 . PF3D7_0933600 120 LNAYTAR|EQ 0.108 . PF3D7_0933600 128 QTGYYCK|CF 0.062 . PF3D7_0933600 131 YYCKCFK|ND 0.056 . PF3D7_0933600 135 CFKNDIK|WC 0.064 . PF3D7_0933600 159 NLIELEK|HV 0.070 . PF3D7_0933600 164 EKHVILR|EM 0.147 . PF3D7_0933600 171 EMEEVEK|CK 0.065 . PF3D7_0933600 173 EEVEKCK|DE 0.065 . PF3D7_0933600 180 DEVIFDK|LH 0.067 . PF3D7_0933600 187 LHMTAFR|DH 0.102 . PF3D7_0933600 203 GPEENIK|NM 0.058 . PF3D7_0933600 206 ENIKNMK|RK 0.062 . PF3D7_0933600 207 NIKNMKR|KD 0.121 . PF3D7_0933600 208 IKNMKRK|DI 0.251 . PF3D7_0933600 216 IIDYINK|NY 0.056 . PF3D7_0933600 222 KNYTSDR|MV 0.150 . PF3D7_0933600 238 QHEEIVK|LA 0.065 . PF3D7_0933600 248 LNFNHLK|TQ 0.074 . PF3D7_0933600 253 LKTQEQK|NN 0.067 . PF3D7_0933600 264 IHNNNDK|PF 0.066 . PF3D7_0933600 275 GSEIIIR|DD 0.117 . PF3D7_0933600 313 CIIGTYK|KN 0.063 . PF3D7_0933600 314 IIGTYKK|NE 0.124 . PF3D7_0933600 323 EGILPGK|LS 0.054 . PF3D7_0933600 328 GKLSANR|TV 0.095 . PF3D7_0933600 336 VNNICNK|MT 0.070 . PF3D7_0933600 396 EEVELAK|IH 0.056 . PF3D7_0933600 400 LAKIHLK|TQ 0.062 . PF3D7_0933600 419 LAEEVSR|QL 0.087 . PF3D7_0933600 426 QLLVYGR|KI 0.100 . PF3D7_0933600 427 LLVYGRK|IS 0.069 . PF3D7_0933600 436 LAEFILR|LN 0.081 . PF3D7_0933600 446 IDTEEVK|RV 0.061 . PF3D7_0933600 447 DTEEVKR|VA 0.233 . PF3D7_0933600 451 VKRVAWK|YL 0.083 . PF3D7_0933600 456 WKYLHDR|DI 0.123 . PF3D7_0933600 476 PQYIDLR|QK 0.075 . PF3D7_0933600 478 YIDLRQK|TY 0.056 . PF3D7_0933600 483 QKTYWLR|Y- 0.090 . ____________________________^_________________

  • Fasta :-

    >PF3D7_0933600 ATGTGGAAAAGAAAAGTGGTAAACGTCGTGTCATGCATTAGGAAAAATAGCAGACCTTTT CTTGGGTACCGATCAAATTATAGTACTTACAATTTACCTCAAGAAATAATAAATCAGCCT ATAACACGAGTAACTGAATTATCTAATAAATTAAAAGTAGCTACTGTTCATACAAATTGT GAAATACCTACAATTGGTTTATGGATAAGTAGTGGTAGTAAATATGAAAATAAAAAAAAT AATGGTGTTGCTCATTTTTTAGAGCATATGATATTTAAAGGTACTAAAAAAAGAAATCGA ATTCAATTAGAAAAAGAAATCGAAAATATGGGAGCACATCTAAATGCTTATACGGCTAGA GAACAGACAGGATATTATTGTAAATGCTTTAAGAATGATATAAAGTGGTGTATCGAATTA TTGAGTGATATACTTAGTAATAGTATATTTGATGATAATTTAATAGAATTAGAAAAACAT GTCATATTAAGAGAAATGGAAGAAGTAGAAAAATGTAAAGATGAAGTTATTTTTGATAAA TTACATATGACCGCTTTTAGAGATCATCCTTTAGGTTTTACTATATTAGGACCTGAAGAA AATATTAAAAACATGAAAAGAAAAGATATTATAGATTATATAAATAAAAATTATACATCA GATCGAATGGTTTTATGTGCCGTTGGTGATGTACAACATGAAGAAATTGTTAAATTAGCT GAACTTAATTTTAATCATTTAAAAACTCAAGAACAAAAAAATAATTCTATTATACATAAT AATAATGATAAACCATTTTTTTGTGGTTCAGAAATTATTATAAGAGATGATGACTCAGGT CCAAATGCACATGTTGCAGTAGCTTTTGAAGGAGTACCTTGGAATTCTCCAGATTCTATA ACCTTCATGTTAATGCAATGTATTATTGGGACCTATAAAAAAAATGAAGAAGGAATTCTA CCAGGAAAATTATCTGCCAATCGAACAGTTAATAATATATGTAATAAAATGACAGTAGGT TGTGCTGACTATTTTACATCCTTTAATACTTGTTATAATAATACTGGACTTTTTGGATTC TATGTACAATGTGATGAAATCGCTGTCGAACATGCACTAGGTGAACTCATGTTCGGTGTC ACCTCACTAAGTTATAGTATTACTGATGAAGAAGTGGAGCTAGCCAAAATACATCTAAAA ACACAACTCATTAGTATGTTTGAATCCTCTTCTACCTTAGCAGAAGAGGTTTCTAGACAA CTCCTCGTGTATGGACGAAAAATATCGCTAGCTGAATTTATACTAAGATTAAATGAAATA GATACAGAAGAAGTTAAAAGGGTGGCTTGGAAATATTTGCATGATAGGGATATAGCAGTA GCCGCCATCGGTGCTTTACATGGCATGCCTCAGTACATCGACCTCAGGCAAAAGACTTAT TGGCTTAGATATTAA
  • Download Fasta

  • Fasta :-

    MWKRKVVNVVSCIRKNSRPFLGYRSNYSTYNLPQEIINQPITRVTELSNKLKVATVHTNC EIPTIGLWISSGSKYENKKNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAR EQTGYYCKCFKNDIKWCIELLSDILSNSIFDDNLIELEKHVILREMEEVEKCKDEVIFDK LHMTAFRDHPLGFTILGPEENIKNMKRKDIIDYINKNYTSDRMVLCAVGDVQHEEIVKLA ELNFNHLKTQEQKNNSIIHNNNDKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWNSPDSI TFMLMQCIIGTYKKNEEGILPGKLSANRTVNNICNKMTVGCADYFTSFNTCYNNTGLFGF YVQCDEIAVEHALGELMFGVTSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEVSRQ LLVYGRKISLAEFILRLNEIDTEEVKRVAWKYLHDRDIAVAAIGALHGMPQYIDLRQKTY WLRY

    No Results
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IDSitePeptideScoreMethod
PF3D7_0933600386 SSLSYSITDE0.997unsp

PFI1625c      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India