PF3D7_1008400 | 26S protease regulatory subunit 4, putative

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  • Fasta :-

    >PF3D7_1008400 MGNTPGGMNNPYGFLGKKEDKDKGKDKDKEKKKLESVPISHMGKKKKKNKGTSGHSKLPN VTPNTKCRLKLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLKIDDLRGSPVSVGTL EELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVS VMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGK TLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGT KRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQ LPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRM KITQADLRKARDKALFQKKGNIPEGLYL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1008400.fa Sequence name : PF3D7_1008400 Sequence length : 448 VALUES OF COMPUTED PARAMETERS Coef20 : 2.215 CoefTot : -2.419 ChDiff : 0 ZoneTo : 18 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.671 1.453 -0.008 0.502 MesoH : -0.735 0.422 -0.383 0.255 MuHd_075 : 17.859 9.812 5.827 3.956 MuHd_095 : 21.577 11.600 6.290 3.286 MuHd_100 : 22.544 13.412 6.216 3.854 MuHd_105 : 16.453 11.887 4.370 3.193 Hmax_075 : 6.883 3.500 -1.275 3.220 Hmax_095 : 10.900 3.600 0.159 3.190 Hmax_100 : 10.900 3.600 0.135 3.190 Hmax_105 : 5.688 3.325 -1.746 2.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9950 0.0050 DFMC : 0.9914 0.0086
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 448 PF3D7_1008400 MGNTPGGMNNPYGFLGKKEDKDKGKDKDKEKKKLESVPISHMGKKKKKNKGTSGHSKLPNVTPNTKCRLKLLKLERIKDY 80 LLLEEEYITNQEQIKSSDDKNYVKLKIDDLRGSPVSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLL 160 NNKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGK 240 TLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLEL 320 LNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSG 400 ADIKAICTEAGLLALRERRMKITQADLRKARDKALFQKKGNIPEGLYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1008400 17 PYGFLGK|KE 0.058 . PF3D7_1008400 18 YGFLGKK|ED 0.084 . PF3D7_1008400 21 LGKKEDK|DK 0.078 . PF3D7_1008400 23 KKEDKDK|GK 0.072 . PF3D7_1008400 25 EDKDKGK|DK 0.093 . PF3D7_1008400 27 KDKGKDK|DK 0.093 . PF3D7_1008400 29 KGKDKDK|EK 0.067 . PF3D7_1008400 31 KDKDKEK|KK 0.064 . PF3D7_1008400 32 DKDKEKK|KL 0.119 . PF3D7_1008400 33 KDKEKKK|LE 0.117 . PF3D7_1008400 44 PISHMGK|KK 0.071 . PF3D7_1008400 45 ISHMGKK|KK 0.121 . PF3D7_1008400 46 SHMGKKK|KK 0.158 . PF3D7_1008400 47 HMGKKKK|KN 0.120 . PF3D7_1008400 48 MGKKKKK|NK 0.213 . PF3D7_1008400 50 KKKKKNK|GT 0.090 . PF3D7_1008400 57 GTSGHSK|LP 0.076 . PF3D7_1008400 66 NVTPNTK|CR 0.053 . PF3D7_1008400 68 TPNTKCR|LK 0.109 . PF3D7_1008400 70 NTKCRLK|LL 0.054 . PF3D7_1008400 73 CRLKLLK|LE 0.058 . PF3D7_1008400 76 KLLKLER|IK 0.080 . PF3D7_1008400 78 LKLERIK|DY 0.062 . PF3D7_1008400 95 TNQEQIK|SS 0.103 . PF3D7_1008400 100 IKSSDDK|NY 0.065 . PF3D7_1008400 104 DDKNYVK|LK 0.064 . PF3D7_1008400 106 KNYVKLK|ID 0.065 . PF3D7_1008400 111 LKIDDLR|GS 0.098 . PF3D7_1008400 149 ILSFVDK|DL 0.094 . PF3D7_1008400 163 SVLLNNK|TN 0.058 . PF3D7_1008400 183 PLVSVMK|VE 0.060 . PF3D7_1008400 186 SVMKVEK|AP 0.060 . PF3D7_1008400 206 SQIQEIK|EA 0.063 . PF3D7_1008400 225 YEDIGIK|PP 0.057 . PF3D7_1008400 228 IGIKPPK|GV 0.097 . PF3D7_1008400 240 GPPGTGK|TL 0.061 . PF3D7_1008400 245 GKTLLAK|AV 0.077 . PF3D7_1008400 257 TSATFLR|VV 0.199 . PF3D7_1008400 266 GSELIQK|YL 0.086 . PF3D7_1008400 273 YLGDGPK|LV 0.074 . PF3D7_1008400 276 DGPKLVR|EM 0.076 . PF3D7_1008400 280 LVREMFK|VA 0.083 . PF3D7_1008400 301 IDAVGTK|RY 0.061 . PF3D7_1008400 302 DAVGTKR|YE 0.162 . PF3D7_1008400 311 ATSGGER|EI 0.079 . PF3D7_1008400 315 GEREIQR|TM 0.087 . PF3D7_1008400 330 LDGFDSR|GD 0.100 . PF3D7_1008400 334 DSRGDVK|VI 0.062 . PF3D7_1008400 341 VIMATNR|ID 0.079 . PF3D7_1008400 351 LDPALIR|PG 0.073 . PF3D7_1008400 354 ALIRPGR|ID 0.232 . PF3D7_1008400 357 RPGRIDR|KI 0.193 . PF3D7_1008400 358 PGRIDRK|IQ 0.077 . PF3D7_1008400 367 LPNPDTK|TK 0.073 . PF3D7_1008400 369 NPDTKTK|RR 0.069 . PF3D7_1008400 370 PDTKTKR|RI 0.226 . PF3D7_1008400 371 DTKTKRR|IF 0.136 . PF3D7_1008400 379 FQIHTSK|MT 0.061 . PF3D7_1008400 395 EEFVMSK|DE 0.060 . PF3D7_1008400 404 LSGADIK|AI 0.069 . PF3D7_1008400 416 AGLLALR|ER 0.067 . PF3D7_1008400 418 LLALRER|RM 0.080 . PF3D7_1008400 419 LALRERR|MK 0.416 . PF3D7_1008400 421 LRERRMK|IT 0.146 . PF3D7_1008400 428 ITQADLR|KA 0.091 . PF3D7_1008400 429 TQADLRK|AR 0.117 . PF3D7_1008400 431 ADLRKAR|DK 0.273 . PF3D7_1008400 433 LRKARDK|AL 0.089 . PF3D7_1008400 438 DKALFQK|KG 0.065 . PF3D7_1008400 439 KALFQKK|GN 0.119 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1008400 ATGGGAAATACTCCAGGTGGTATGAATAATCCTTATGGATTTTTAGGAAAAAAAGAGGAT AAGGATAAAGGTAAAGACAAAGATAAGGAAAAGAAAAAGCTGGAAAGTGTTCCAATATCT CATATGGGAAAAAAAAAGAAGAAAAACAAAGGAACATCAGGTCATTCAAAATTACCAAAC GTTACACCTAATACAAAATGTCGATTAAAATTATTAAAATTAGAAAGGATAAAAGATTAT TTATTATTAGAAGAAGAATATATAACAAATCAAGAGCAGATTAAAAGTAGTGATGATAAG AATTATGTGAAATTGAAAATAGATGATTTAAGAGGATCACCTGTGAGTGTAGGTACCTTA GAAGAATTAATAGATGAAAATCATGGTATTATAGCTACATCTGTTGGTCCAGAATATTAT GTAAATATATTATCATTTGTTGATAAAGATTTATTAGAACCTGGTTGTTCAGTTTTATTA AATAATAAAACAAATAGTGTAGTAGGAATATTATTAGATGAAGTGGATCCATTAGTATCA GTTATGAAAGTAGAAAAAGCTCCATTAGAATCTTATGCAGATATTGGTGGGTTAGAATCA CAAATACAAGAAATAAAAGAAGCTGTTGAATTACCTCTAACACATCCAGAACTTTATGAA GATATTGGTATCAAACCACCTAAGGGTGTTATCTTATATGGTCCACCAGGTACTGGTAAA ACATTATTAGCTAAAGCTGTAGCTAATGAAACCTCTGCTACATTTTTAAGAGTTGTGGGT TCTGAATTAATACAAAAATATTTAGGTGATGGTCCAAAATTAGTTAGAGAAATGTTTAAA GTTGCAGAAGAACATGCACCTTCCATTGTTTTTATTGATGAAATTGATGCCGTAGGTACC AAAAGATATGAAGCTACAAGTGGAGGAGAAAGAGAAATTCAAAGAACTATGTTAGAACTA TTAAACCAATTAGATGGTTTCGATTCTAGAGGTGATGTTAAAGTTATTATGGCTACTAAT AGAATCGATTCATTAGATCCTGCACTAATCCGACCAGGTAGAATTGATAGAAAAATACAA TTACCTAACCCAGATACCAAAACAAAAAGAAGAATCTTTCAAATACATACTAGTAAAATG ACTATGTCTCCTGATGTAGATTTAGAAGAATTTGTTATGTCAAAAGATGAATTATCAGGT GCTGATATAAAAGCTATATGTACAGAAGCTGGACTCCTAGCTCTTAGAGAAAGACGAATG AAAATAACACAAGCAGATTTACGTAAGGCACGAGATAAGGCATTATTCCAAAAGAAAGGA AACATACCAGAAGGTTTATACTTATAA
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  • Fasta :-

    MGNTPGGMNNPYGFLGKKEDKDKGKDKDKEKKKLESVPISHMGKKKKKNKGTSGHSKLPN VTPNTKCRLKLLKLERIKDYLLLEEEYITNQEQIKSSDDKNYVKLKIDDLRGSPVSVGTL EELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVS VMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGK TLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEEHAPSIVFIDEIDAVGT KRYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQ LPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRM KITQADLRKARDKALFQKKGNIPEGLYL

  • title: ATP binding site
  • coordinates: P235,P236,G237,T238,G239,K240,T241,L242,D293,N340
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1008400307 SYEATSGGER0.996unspPF3D7_1008400399 SKDELSGADI0.993unsp

PF10_0081      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India