PF3D7_1011400 | proteasome subunit beta type-5

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1011400OTHER0.9866630.0133300.000007
No Results

  • Fasta :-

    >PF3D7_1011400 MVIASDESFMNEIDNLINDVEDERIDNDELEFCVAPVNVPRNFIKYAQTQNKKLFDFHKG TTTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLG KIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYVDDSGKK VEGNLFSCGSGSTYAYSILDSAYDYNLNLDQAVELARNAIYHATFRDGGSGGKVRVFHIH KNGYDKIIEGEDVFDLHYHYTNPEQKDQYVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1011400.fa Sequence name : PF3D7_1011400 Sequence length : 271 VALUES OF COMPUTED PARAMETERS Coef20 : 3.645 CoefTot : 0.253 ChDiff : -10 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.457 MesoH : -0.375 0.273 -0.265 0.222 MuHd_075 : 12.231 11.270 4.374 3.418 MuHd_095 : 32.169 23.305 9.177 6.394 MuHd_100 : 27.095 24.721 8.798 6.675 MuHd_105 : 19.420 23.234 7.712 6.316 Hmax_075 : 10.400 13.800 1.500 5.060 Hmax_095 : 9.713 15.225 1.249 5.180 Hmax_100 : 9.800 18.900 1.894 6.240 Hmax_105 : 10.000 19.017 1.796 6.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8725 0.1275 DFMC : 0.9437 0.0563
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 271 PF3D7_1011400 MVIASDESFMNEIDNLINDVEDERIDNDELEFCVAPVNVPRNFIKYAQTQNKKLFDFHKGTTTLAFKFKDGIIVAVDSRA 80 SMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGII 160 LSGYDHTGFNMFYVDDSGKKVEGNLFSCGSGSTYAYSILDSAYDYNLNLDQAVELARNAIYHATFRDGGSGGKVRVFHIH 240 KNGYDKIIEGEDVFDLHYHYTNPEQKDQYVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1011400 24 NDVEDER|ID 0.075 . PF3D7_1011400 41 APVNVPR|NF 0.110 . PF3D7_1011400 45 VPRNFIK|YA 0.099 . PF3D7_1011400 52 YAQTQNK|KL 0.074 . PF3D7_1011400 53 AQTQNKK|LF 0.081 . PF3D7_1011400 59 KLFDFHK|GT 0.075 . PF3D7_1011400 67 TTTLAFK|FK 0.072 . PF3D7_1011400 69 TLAFKFK|DG 0.093 . PF3D7_1011400 79 IVAVDSR|AS 0.099 . PF3D7_1011400 93 SSQNVEK|II 0.079 . PF3D7_1011400 99 KIIEINK|NI 0.058 . PF3D7_1011400 117 DCLYWEK|YL 0.078 . PF3D7_1011400 121 WEKYLGK|II 0.066 . PF3D7_1011400 124 YLGKIIK|IY 0.065 . PF3D7_1011400 129 IKIYELR|NN 0.087 . PF3D7_1011400 133 ELRNNEK|IS 0.063 . PF3D7_1011400 137 NEKISVR|AA 0.145 . PF3D7_1011400 151 NILYQYK|GY 0.066 . PF3D7_1011400 179 YVDDSGK|KV 0.080 . PF3D7_1011400 180 VDDSGKK|VE 0.076 . PF3D7_1011400 217 QAVELAR|NA 0.087 . PF3D7_1011400 226 IYHATFR|DG 0.149 . PF3D7_1011400 233 DGGSGGK|VR 0.051 . PF3D7_1011400 235 GSGGKVR|VF 0.107 . PF3D7_1011400 241 RVFHIHK|NG 0.060 . PF3D7_1011400 246 HKNGYDK|II 0.076 . PF3D7_1011400 266 YTNPEQK|DQ 0.073 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1011400 ATGGTAATAGCAAGTGATGAAAGCTTTATGAATGAAATTGATAATTTAATAAATGATGTG GAAGATGAAAGAATAGATAATGATGAATTAGAGTTTTGTGTAGCTCCAGTGAATGTACCA AGAAATTTTATAAAATATGCACAAACTCAAAATAAGAAATTATTTGATTTTCATAAAGGT ACTACAACTTTAGCATTTAAATTTAAAGATGGGATAATAGTTGCAGTAGATTCCCGAGCA TCTATGGGATCTTTTATATCTTCACAGAATGTTGAAAAGATTATTGAAATAAATAAAAAT ATATTAGGAACAATGGCAGGAGGAGCTGCTGATTGCTTATATTGGGAAAAATATTTAGGT AAAATAATAAAGATTTATGAATTAAGAAATAACGAAAAAATATCAGTACGTGCAGCTAGT ACTATATTAAGTAATATATTATATCAATATAAAGGATATGGTTTGTGTTGTGGTATTATT TTAAGTGGTTATGATCATACCGGATTTAATATGTTTTATGTTGATGATTCAGGAAAAAAA GTGGAAGGAAATTTATTCAGTTGTGGTAGTGGTAGTACATATGCTTATTCTATTTTAGAT TCAGCATATGATTATAATTTAAATCTAGACCAAGCTGTTGAATTAGCTAGAAATGCAATT TATCATGCTACTTTTAGAGATGGTGGTTCAGGAGGAAAAGTAAGAGTTTTTCATATTCAC AAAAATGGATATGACAAAATAATTGAAGGAGAAGATGTTTTCGATTTACATTACCATTAT ACTAATCCTGAACAAAAGGATCAATATGTTATGTGA
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  • Fasta :-

    MVIASDESFMNEIDNLINDVEDERIDNDELEFCVAPVNVPRNFIKYAQTQNKKLFDFHKG TTTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLG KIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYVDDSGKK VEGNLFSCGSGSTYAYSILDSAYDYNLNLDQAVELARNAIYHATFRDGGSGGKVRVFHIH KNGYDKIIEGEDVFDLHYHYTNPEQKDQYVM

  • title: active site
  • coordinates: T61,D77,R79,K93,S190,D227,S230,G231
No Results
No Results
No Results

PF10_0111      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India