PF3D7_1114100 | rhomboid protease ROM1

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1114100OTHER0.9999960.0000010.000003
No Results

  • Fasta :-

    >PF3D7_1114100 MSNIHTLAEYRDDYAENTPFNRTPDYYQSQSSFVQRSKPIDLLNLIFPHFTWKSFMVVIS IIQLIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHAIF NIFFQLRMGFTLEKNYGIMKIIILYFVTGMYGNILSSSITYCPIKVGASTSGMGLVGIVT SELILLWHIIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLISGISLGILYNE HMDNKPRWYNHLKIGSYISLVLLAIIPTVVLFTIPRTC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1114100.fa Sequence name : PF3D7_1114100 Sequence length : 278 VALUES OF COMPUTED PARAMETERS Coef20 : 3.327 CoefTot : 0.002 ChDiff : 5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.941 0.504 0.925 MesoH : 0.705 1.159 -0.030 0.467 MuHd_075 : 16.550 5.544 3.727 3.434 MuHd_095 : 17.541 15.908 6.764 2.446 MuHd_100 : 22.199 18.734 7.501 3.597 MuHd_105 : 24.083 17.647 7.004 3.741 Hmax_075 : 2.100 -3.150 -3.081 1.633 Hmax_095 : -4.550 3.200 -2.692 1.240 Hmax_100 : 1.400 8.600 -0.568 1.830 Hmax_105 : 0.612 6.387 -0.835 1.829 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9928 0.0072 DFMC : 0.9920 0.0080
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 278 PF3D7_1114100 MSNIHTLAEYRDDYAENTPFNRTPDYYQSQSSFVQRSKPIDLLNLIFPHFTWKSFMVVISIIQLIVFIISVSIKPADFLT 80 PSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHAIFNIFFQLRMGFTLEKNYGIMKIIILYFVTGMYGNILSSSIT 160 YCPIKVGASTSGMGLVGIVTSELILLWHIIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLISGISLGILYNE 240 HMDNKPRWYNHLKIGSYISLVLLAIIPTVVLFTIPRTC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1114100 11 HTLAEYR|DD 0.091 . PF3D7_1114100 22 ENTPFNR|TP 0.084 . PF3D7_1114100 36 QSSFVQR|SK 0.173 . PF3D7_1114100 38 SFVQRSK|PI 0.063 . PF3D7_1114100 53 FPHFTWK|SF 0.105 . PF3D7_1114100 74 IISVSIK|PA 0.089 . PF3D7_1114100 96 GANVASR|IK 0.114 . PF3D7_1114100 98 NVASRIK|QG 0.061 . PF3D7_1114100 104 KQGEIHR|LI 0.086 . PF3D7_1114100 127 NIFFQLR|MG 0.094 . PF3D7_1114100 134 MGFTLEK|NY 0.063 . PF3D7_1114100 140 KNYGIMK|II 0.066 . PF3D7_1114100 165 ITYCPIK|VG 0.056 . PF3D7_1114100 191 LLWHIIR|HR 0.092 . PF3D7_1114100 193 WHIIRHR|ER 0.068 . PF3D7_1114100 195 IIRHRER|VV 0.149 . PF3D7_1114100 245 NEHMDNK|PR 0.057 . PF3D7_1114100 247 HMDNKPR|WY 0.097 . PF3D7_1114100 253 RWYNHLK|IG 0.068 . PF3D7_1114100 276 VLFTIPR|TC 0.078 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1114100 ATGAGTAATATTCATACGCTAGCAGAGTATCGAGATGATTATGCCGAAAATACACCCTTC AACAGAACGCCAGATTATTATCAGTCTCAGAGTAGTTTTGTTCAAAGGTCTAAACCAATT GATTTATTGAACCTTATATTTCCCCACTTTACATGGAAAAGTTTTATGGTCGTTATTTCT ATTATACAGTTGATTGTTTTTATCATATCAGTGAGTATAAAACCAGCAGACTTCCTTACC CCTTCAGATAGCTTATTAGTAACCCTTGGTGCGAATGTTGCGTCGAGAATAAAACAGGGA GAAATTCACAGATTGATTTTACCCATATTTTTACATGCAAATATATTCCATGCAATTTTT AATATTTTTTTTCAATTAAGAATGGGATTTACATTAGAAAAGAATTATGGTATTATGAAG ATTATCATACTTTATTTTGTTACCGGTATGTATGGAAATATTTTATCCTCCTCCATAACA TATTGTCCAATAAAAGTAGGGGCAAGTACATCAGGTATGGGGTTAGTTGGAATAGTAACA TCTGAATTAATTTTATTGTGGCATATAATTAGACATAGAGAAAGAGTTGTTTTTAATATA ATATTTTTTTCTTTAATATCTTTTTTTTATTACTTCACTTTTAATGGTTCTAATATTGAC CACGTTGGTCATTTAGGAGGCTTAATATCGGGCATATCCCTCGGAATATTATACAATGAA CATATGGATAACAAACCTAGATGGTATAACCATTTAAAAATAGGTTCATATATTTCATTA GTTCTTTTGGCTATTATACCAACCGTCGTTTTATTTACAATACCTCGTACATGTTAA
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  • Fasta :-

    MSNIHTLAEYRDDYAENTPFNRTPDYYQSQSSFVQRSKPIDLLNLIFPHFTWKSFMVVIS IIQLIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHANIFHAIF NIFFQLRMGFTLEKNYGIMKIIILYFVTGMYGNILSSSITYCPIKVGASTSGMGLVGIVT SELILLWHIIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLISGISLGILYNE HMDNKPRWYNHLKIGSYISLVLLAIIPTVVLFTIPRTC

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India