PF3D7_1130400 | 26S protease regulatory subunit 6A, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1130400OTHER0.9999830.0000050.000013
No Results

  • Fasta :-

    >PF3D7_1130400 MNVENIFGNEEVNVEEIEKLSNSEIKTRVSLIDTEIKILKNEHARLKNEYKNLQEKIKDN VEKIHLNKMLPYLVANVVESLDLEDEEEENEIKDEYDLYDNNLKLSHEGFRDIDDEKRGK CMVIKTSTRQTIFLPVPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEK PSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARAC ASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSEL SGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEE SRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDF VEGITSVLSKKKSTLNYFT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1130400.fa Sequence name : PF3D7_1130400 Sequence length : 439 VALUES OF COMPUTED PARAMETERS Coef20 : 2.930 CoefTot : -0.134 ChDiff : -20 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.012 -0.103 0.465 MesoH : -0.580 0.277 -0.410 0.197 MuHd_075 : 21.950 16.413 6.395 4.912 MuHd_095 : 6.274 9.383 1.971 2.316 MuHd_100 : 12.611 14.822 4.559 3.751 MuHd_105 : 16.279 16.533 5.732 4.274 Hmax_075 : 3.400 8.300 -0.976 3.760 Hmax_095 : -5.337 8.487 -2.678 3.447 Hmax_100 : 2.100 13.200 -0.619 4.720 Hmax_105 : 2.100 13.200 -0.619 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9834 0.0166 DFMC : 0.9765 0.0235
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 439 PF3D7_1130400 MNVENIFGNEEVNVEEIEKLSNSEIKTRVSLIDTEIKILKNEHARLKNEYKNLQEKIKDNVEKIHLNKMLPYLVANVVES 80 LDLEDEEEENEIKDEYDLYDNNLKLSHEGFRDIDDEKRGKCMVIKTSTRQTIFLPVPGLIDASELKPGDLVGVNKDSYLI 160 IDKLPQEYDNRVKAMEVIEKPSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARAC 240 ASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQRTMLELLNQLDGF 320 STDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVC 400 VEAGMIALRRGATEIDHEDFVEGITSVLSKKKSTLNYFT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1130400 19 NVEEIEK|LS 0.058 . PF3D7_1130400 26 LSNSEIK|TR 0.068 . PF3D7_1130400 28 NSEIKTR|VS 0.078 . PF3D7_1130400 37 LIDTEIK|IL 0.056 . PF3D7_1130400 40 TEIKILK|NE 0.065 . PF3D7_1130400 45 LKNEHAR|LK 0.099 . PF3D7_1130400 47 NEHARLK|NE 0.064 . PF3D7_1130400 51 RLKNEYK|NL 0.073 . PF3D7_1130400 56 YKNLQEK|IK 0.077 . PF3D7_1130400 58 NLQEKIK|DN 0.081 . PF3D7_1130400 63 IKDNVEK|IH 0.063 . PF3D7_1130400 68 EKIHLNK|ML 0.062 . PF3D7_1130400 93 EEENEIK|DE 0.062 . PF3D7_1130400 104 LYDNNLK|LS 0.060 . PF3D7_1130400 111 LSHEGFR|DI 0.179 . PF3D7_1130400 117 RDIDDEK|RG 0.053 . PF3D7_1130400 118 DIDDEKR|GK 0.176 . PF3D7_1130400 120 DDEKRGK|CM 0.059 . PF3D7_1130400 125 GKCMVIK|TS 0.070 . PF3D7_1130400 129 VIKTSTR|QT 0.078 . PF3D7_1130400 146 IDASELK|PG 0.064 . PF3D7_1130400 155 DLVGVNK|DS 0.072 . PF3D7_1130400 163 SYLIIDK|LP 0.052 . PF3D7_1130400 171 PQEYDNR|VK 0.068 . PF3D7_1130400 173 EYDNRVK|AM 0.067 . PF3D7_1130400 180 AMEVIEK|PS 0.066 . PF3D7_1130400 193 DIGGLDK|QI 0.070 . PF3D7_1130400 209 VLPMLHK|EK 0.060 . PF3D7_1130400 211 PMLHKEK|FE 0.066 . PF3D7_1130400 214 HKEKFEK|IG 0.065 . PF3D7_1130400 218 FEKIGIK|PP 0.070 . PF3D7_1130400 221 IGIKPPK|GV 0.100 . PF3D7_1130400 233 GPPGTGK|TL 0.059 . PF3D7_1130400 238 GKTLLAR|AC 0.090 . PF3D7_1130400 250 TNATFLK|LA 0.118 . PF3D7_1130400 266 FIGDGAK|MV 0.085 . PF3D7_1130400 269 DGAKMVR|DA 0.122 . PF3D7_1130400 276 DAFNLAK|EK 0.067 . PF3D7_1130400 278 FNLAKEK|AP 0.061 . PF3D7_1130400 294 LDAIGTK|RF 0.062 . PF3D7_1130400 295 DAIGTKR|FD 0.174 . PF3D7_1130400 304 SELSGDR|EV 0.080 . PF3D7_1130400 308 GDREVQR|TM 0.096 . PF3D7_1130400 327 STDDTVK|VI 0.057 . PF3D7_1130400 334 VIAATNR|PD 0.077 . PF3D7_1130400 344 LDPALLR|SG 0.086 . PF3D7_1130400 347 ALLRSGR|LD 0.220 . PF3D7_1130400 350 RSGRLDR|KI 0.247 . PF3D7_1130400 351 SGRLDRK|IE 0.071 . PF3D7_1130400 362 HPNEESR|AR 0.108 . PF3D7_1130400 364 NEESRAR|IL 0.090 . PF3D7_1130400 371 ILQIHSR|KM 0.090 . PF3D7_1130400 372 LQIHSRK|MN 0.092 . PF3D7_1130400 377 RKMNVHK|DV 0.132 . PF3D7_1130400 386 NFEELAR|ST 0.126 . PF3D7_1130400 397 FNGAQLK|AV 0.088 . PF3D7_1130400 409 AGMIALR|RG 0.095 . PF3D7_1130400 410 GMIALRR|GA 0.209 . PF3D7_1130400 430 ITSVLSK|KK 0.073 . PF3D7_1130400 431 TSVLSKK|KS 0.096 . PF3D7_1130400 432 SVLSKKK|ST 0.150 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1130400 ATGAATGTTGAGAATATTTTTGGAAATGAAGAAGTGAATGTAGAAGAAATTGAAAAATTG TCAAATAGCGAAATAAAAACGCGTGTTAGTTTAATTGATACTGAAATAAAAATATTGAAG AATGAACATGCAAGATTAAAAAATGAATATAAGAATTTACAAGAAAAGATAAAAGATAAT GTGGAGAAAATTCATTTAAACAAAATGCTACCTTATTTAGTAGCTAATGTAGTGGAATCA TTAGACTTAGAAGATGAAGAAGAAGAAAACGAAATAAAAGATGAATATGATTTATATGAT AATAATTTAAAATTAAGTCATGAAGGATTTCGTGATATAGATGATGAGAAAAGAGGGAAA TGTATGGTTATTAAAACGTCAACTAGACAAACAATATTCTTACCAGTTCCAGGTTTAATA GATGCTTCTGAACTTAAACCGGGTGATTTAGTAGGTGTTAATAAAGATAGCTATTTAATA ATTGATAAATTACCACAAGAATATGATAATAGAGTTAAAGCTATGGAAGTTATTGAAAAA CCATCAGAAGATTATTCTGATATTGGAGGTCTAGATAAACAAATCGAAGATTTGGTAGAA GCTATTGTTTTACCAATGTTACATAAAGAAAAGTTTGAGAAAATCGGAATAAAACCACCG AAGGGTGTATTAATGCATGGACCACCAGGTACAGGAAAAACTCTATTAGCTAGAGCTTGT GCATCACAAACCAATGCTACTTTTTTAAAACTAGCTGGACCACAACTTGTTCAAATGTTT ATTGGAGATGGTGCCAAAATGGTTAGAGACGCTTTCAATTTAGCAAAAGAAAAAGCACCT GCTATTATTTTTATTGATGAATTAGATGCTATTGGAACAAAAAGATTTGACAGTGAATTG TCAGGTGATAGAGAAGTACAAAGAACCATGCTTGAACTTCTAAATCAATTAGATGGTTTT AGTACAGATGATACAGTTAAAGTAATTGCAGCTACTAACAGACCAGATACATTAGATCCA GCTTTATTAAGATCTGGACGACTTGATAGAAAAATCGAATTACCACATCCTAATGAAGAA TCAAGAGCAAGAATTTTGCAAATCCATTCAAGGAAAATGAATGTCCACAAAGATGTCAAT TTTGAAGAATTAGCCAGATCAACTGACGATTTTAATGGAGCACAGTTAAAAGCTGTTTGT GTTGAAGCTGGAATGATAGCCTTAAGAAGAGGAGCAACCGAAATTGATCATGAAGATTTT GTGGAAGGCATTACATCGGTATTGTCTAAAAAGAAGAGTACCTTGAATTATTTTACTTAA
  • Download Fasta

  • Fasta :-

    MNVENIFGNEEVNVEEIEKLSNSEIKTRVSLIDTEIKILKNEHARLKNEYKNLQEKIKDN VEKIHLNKMLPYLVANVVESLDLEDEEEENEIKDEYDLYDNNLKLSHEGFRDIDDEKRGK CMVIKTSTRQTIFLPVPGLIDASELKPGDLVGVNKDSYLIIDKLPQEYDNRVKAMEVIEK PSEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGPPGTGKTLLARAC ASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSEL SGDREVQRTMLELLNQLDGFSTDDTVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEE SRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIALRRGATEIDHEDF VEGITSVLSKKKSTLNYFT

  • title: ATP binding site
  • coordinates: P228,P229,G230,T231,G232,K233,T234,L235,D286,N333
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_1130400429 STSVLSKKKS0.995unspPF3D7_1130400429 STSVLSKKKS0.995unspPF3D7_1130400429 STSVLSKKKS0.995unspPF3D7_113040030 SKTRVSLIDT0.998unspPF3D7_1130400298 SKRFDSELSG0.994unsp

PF11_0314      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India