PF3D7_1305600 | site-2 protease S2P, putative

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_IDPredictionOTHERSPmTPCS_Position
PF3D7_1305600OTHER0.9999550.0000020.000043
No Results

  • Fasta :-

    >PF3D7_1305600 MGSRNKMLLYNNALMEHKRLASSFLSVYKEKAYNYEKCQNCLSYFLSLVPLLIVGGIHLF IKMNGYYIGNLFLTITYLFSFFFFILYYYNSYIIFVLFVFFAFLIYLCLHEFAHALVAYK YGDITMIYKGYLYLDILNYLDIFHTLIIPLITLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPLSDILYILFIVFFYNLYSYFKNHKNLNVQPHSILFISLATAVSFLVDSFLLNLC PILGFDGWGILEPYLPYCLNNIINEEIVYTYLSYICPLLVFIYFNFIEARYLFFTRIVNF ILARILGIELGHVTNGVNTFPTLYSYLRKI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1305600.fa Sequence name : PF3D7_1305600 Sequence length : 330 VALUES OF COMPUTED PARAMETERS Coef20 : 3.952 CoefTot : -0.167 ChDiff : 4 ZoneTo : 29 KR : 5 DE : 1 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.771 3.182 0.628 1.057 MesoH : 1.508 1.656 0.166 0.705 MuHd_075 : 11.419 16.469 5.002 4.045 MuHd_095 : 22.730 18.267 5.460 7.300 MuHd_100 : 24.071 16.356 5.933 7.335 MuHd_105 : 32.625 21.588 8.506 8.458 Hmax_075 : 4.637 12.338 -1.098 3.500 Hmax_095 : 10.150 11.638 0.223 4.900 Hmax_100 : 8.800 9.900 -0.270 4.500 Hmax_105 : 12.250 15.400 0.739 5.507 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5566 0.4434 DFMC : 0.7749 0.2251
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 330 PF3D7_1305600 MGSRNKMLLYNNALMEHKRLASSFLSVYKEKAYNYEKCQNCLSYFLSLVPLLIVGGIHLFIKMNGYYIGNLFLTITYLFS 80 FFFFILYYYNSYIIFVLFVFFAFLIYLCLHEFAHALVAYKYGDITMIYKGYLYLDILNYLDIFHTLIIPLITLFITGFGI 160 PGNLYWLQLHFIRSRFQLSFIFLSGPLSDILYILFIVFFYNLYSYFKNHKNLNVQPHSILFISLATAVSFLVDSFLLNLC 240 PILGFDGWGILEPYLPYCLNNIINEEIVYTYLSYICPLLVFIYFNFIEARYLFFTRIVNFILARILGIELGHVTNGVNTF 320 PTLYSYLRKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1305600 4 ---MGSR|NK 0.065 . PF3D7_1305600 6 -MGSRNK|ML 0.057 . PF3D7_1305600 18 NALMEHK|RL 0.059 . PF3D7_1305600 19 ALMEHKR|LA 0.238 . PF3D7_1305600 29 SFLSVYK|EK 0.056 . PF3D7_1305600 31 LSVYKEK|AY 0.071 . PF3D7_1305600 37 KAYNYEK|CQ 0.053 . PF3D7_1305600 62 GIHLFIK|MN 0.081 . PF3D7_1305600 120 HALVAYK|YG 0.062 . PF3D7_1305600 129 DITMIYK|GY 0.054 . PF3D7_1305600 173 LQLHFIR|SR 0.105 . PF3D7_1305600 175 LHFIRSR|FQ 0.076 . PF3D7_1305600 207 NLYSYFK|NH 0.055 . PF3D7_1305600 210 SYFKNHK|NL 0.070 . PF3D7_1305600 290 FNFIEAR|YL 0.098 . PF3D7_1305600 296 RYLFFTR|IV 0.113 . PF3D7_1305600 304 VNFILAR|IL 0.126 . PF3D7_1305600 328 TLYSYLR|KI 0.091 . PF3D7_1305600 329 LYSYLRK|I- 0.096 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1305600 ATGGGTTCAAGAAATAAAATGCTACTTTATAATAACGCATTAATGGAACATAAAAGATTA GCTAGCAGTTTTTTATCAGTATATAAAGAAAAAGCTTATAATTATGAAAAGTGTCAGAAT TGTTTATCATATTTTTTATCGTTAGTTCCTTTATTAATTGTAGGTGGAATACATTTATTT ATAAAAATGAATGGTTACTATATTGGGAATTTATTTTTAACAATAACATATTTGTTTTCT TTCTTTTTCTTTATATTATATTATTATAATTCATACATAATATTTGTATTATTTGTATTT TTCGCATTTTTGATATACTTATGTTTACACGAATTTGCACATGCATTGGTTGCATATAAG TATGGTGACATTACTATGATATATAAAGGGTATTTATATTTGGATATATTGAATTATTTA GATATTTTTCATACATTAATAATACCCCTAATAACACTATTTATAACAGGGTTTGGTATT CCTGGAAATTTATATTGGTTACAATTACATTTTATAAGAAGTCGATTTCAATTATCTTTT ATATTTTTATCTGGTCCATTATCAGATATATTGTATATATTATTTATAGTTTTTTTTTAT AATTTATATTCATATTTTAAAAATCATAAGAATTTAAATGTGCAGCCACATTCAATATTG TTTATATCGTTGGCTACAGCTGTTTCTTTCTTAGTGGATTCGTTTCTTTTAAACTTATGT CCTATTTTAGGTTTTGATGGTTGGGGTATACTTGAGCCGTATTTACCCTATTGCTTAAAC AACATAATAAATGAAGAAATTGTGTACACTTATCTGTCGTACATATGTCCACTATTAGTG TTCATATATTTCAATTTCATTGAAGCGAGATATCTGTTTTTTACCAGAATTGTTAATTTT ATACTAGCAAGAATTTTAGGTATTGAATTGGGTCATGTAACAAATGGAGTTAACACTTTC CCAACTTTATATTCTTATCTTCGAAAAATTTAA
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  • Fasta :-

    MGSRNKMLLYNNALMEHKRLASSFLSVYKEKAYNYEKCQNCLSYFLSLVPLLIVGGIHLF IKMNGYYIGNLFLTITYLFSFFFFILYYYNSYIIFVLFVFFAFLIYLCLHEFAHALVAYK YGDITMIYKGYLYLDILNYLDIFHTLIIPLITLFITGFGIPGNLYWLQLHFIRSRFQLSF IFLSGPLSDILYILFIVFFYNLYSYFKNHKNLNVQPHSILFISLATAVSFLVDSFLLNLC PILGFDGWGILEPYLPYCLNNIINEEIVYTYLSYICPLLVFIYFNFIEARYLFFTRIVNF ILARILGIELGHVTNGVNTFPTLYSYLRKI

    No Results
  • title: active site
  • coordinates: H110,E111,H114,N238,D246
No Results
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PF13_0028      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India