PF3D7_1306400 | 26S protease regulatory subunit 10B, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1306400OTHER0.9999810.0000060.000013
No Results

  • Fasta :-

    >PF3D7_1306400 MDNKESIKLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR AMRDYVIEEDFYKAARKISEGKKLEGKIEYEKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1306400.fa Sequence name : PF3D7_1306400 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.424 CoefTot : 0.000 ChDiff : 10 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.647 1.194 -0.004 0.352 MesoH : -0.784 0.320 -0.385 0.179 MuHd_075 : 40.449 22.614 12.776 8.933 MuHd_095 : 19.584 15.491 8.116 3.498 MuHd_100 : 19.086 14.618 6.377 2.855 MuHd_105 : 20.640 12.902 4.788 3.017 Hmax_075 : 3.500 11.200 -0.440 4.387 Hmax_095 : -5.075 8.100 -1.626 1.980 Hmax_100 : -11.000 5.500 -4.349 0.220 Hmax_105 : -9.000 6.125 -4.568 1.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9641 0.0359 DFMC : 0.9514 0.0486
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 PF3D7_1306400 MDNKESIKLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLKQLEDEKFIVKASSGPRYVVG 80 CKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLVFNMISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNP 160 YLYKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEID 240 AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIH 320 ANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIRAMRDYVIEEDFYKAARKISEGKKLEGKIEYEKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1306400 4 ---MDNK|ES 0.056 . PF3D7_1306400 8 DNKESIK|LY 0.060 . PF3D7_1306400 12 SIKLYVK|KV 0.067 . PF3D7_1306400 13 IKLYVKK|VI 0.132 . PF3D7_1306400 18 KKVIEHR|EI 0.102 . PF3D7_1306400 23 HREIESK|VK 0.060 . PF3D7_1306400 25 EIESKVK|KL 0.061 . PF3D7_1306400 26 IESKVKK|LR 0.100 . PF3D7_1306400 28 SKVKKLR|LD 0.108 . PF3D7_1306400 32 KLRLDIK|EL 0.068 . PF3D7_1306400 36 DIKELNK|KY 0.064 . PF3D7_1306400 37 IKELNKK|YE 0.086 . PF3D7_1306400 40 LNKKYEK|TE 0.055 . PF3D7_1306400 46 KTEDNLK|AL 0.061 . PF3D7_1306400 60 IIGQVLK|QL 0.073 . PF3D7_1306400 66 KQLEDEK|FI 0.062 . PF3D7_1306400 70 DEKFIVK|AS 0.059 . PF3D7_1306400 76 KASSGPR|YV 0.132 . PF3D7_1306400 82 RYVVGCK|SK 0.068 . PF3D7_1306400 84 VVGCKSK|IN 0.066 . PF3D7_1306400 87 CKSKINK|SK 0.100 . PF3D7_1306400 89 SKINKSK|LV 0.106 . PF3D7_1306400 95 KLVIGTR|VS 0.072 . PF3D7_1306400 107 TTLTVMK|RL 0.057 . PF3D7_1306400 108 TLTVMKR|LP 0.146 . PF3D7_1306400 126 MISDIDK|SE 0.075 . PF3D7_1306400 133 SENSTNK|VN 0.069 . PF3D7_1306400 147 GLSEQIR|QM 0.125 . PF3D7_1306400 150 EQIRQMR|EV 0.279 . PF3D7_1306400 164 LNPYLYK|RV 0.083 . PF3D7_1306400 165 NPYLYKR|VG 0.149 . PF3D7_1306400 169 YKRVGIK|TP 0.063 . PF3D7_1306400 172 VGIKTPK|GV 0.075 . PF3D7_1306400 184 GPPGTGK|TL 0.060 . PF3D7_1306400 189 GKTLLAR|AM 0.083 . PF3D7_1306400 201 INCNFMR|IV 0.138 . PF3D7_1306400 210 VSAIVDK|YI 0.092 . PF3D7_1306400 217 YIGESAR|II 0.113 . PF3D7_1306400 220 ESARIIR|EM 0.226 . PF3D7_1306400 227 EMFNYAK|EH 0.061 . PF3D7_1306400 245 IDAIGGR|RF 0.101 . PF3D7_1306400 246 DAIGGRR|FS 0.106 . PF3D7_1306400 255 QGTSADR|EI 0.077 . PF3D7_1306400 259 ADREIQR|TL 0.105 . PF3D7_1306400 278 EELGNVK|II 0.056 . PF3D7_1306400 285 IIMATNR|PD 0.073 . PF3D7_1306400 295 LDPALVR|PG 0.068 . PF3D7_1306400 298 ALVRPGR|LD 0.235 . PF3D7_1306400 301 RPGRLDR|KI 0.348 . PF3D7_1306400 302 PGRLDRK|IE 0.071 . PF3D7_1306400 313 LPNETAR|IE 0.114 . PF3D7_1306400 318 ARIEILK|IH 0.062 . PF3D7_1306400 323 LKIHANK|MT 0.069 . PF3D7_1306400 326 HANKMTK|LG 0.065 . PF3D7_1306400 337 DYESVCR|LC 0.071 . PF3D7_1306400 348 FNGADLR|NV 0.133 . PF3D7_1306400 360 AGMFAIR|AM 0.092 . PF3D7_1306400 363 FAIRAMR|DY 0.313 . PF3D7_1306400 373 IEEDFYK|AA 0.073 . PF3D7_1306400 376 DFYKAAR|KI 0.111 . PF3D7_1306400 377 FYKAARK|IS 0.081 . PF3D7_1306400 382 RKISEGK|KL 0.076 . PF3D7_1306400 383 KISEGKK|LE 0.134 . PF3D7_1306400 387 GKKLEGK|IE 0.062 . PF3D7_1306400 392 GKIEYEK|I- 0.061 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1306400 ATGGATAACAAGGAAAGCATAAAATTGTATGTGAAGAAAGTTATTGAACACAGAGAAATT GAGAGTAAAGTAAAGAAGTTAAGATTAGATATAAAAGAGTTAAATAAAAAATATGAGAAA ACTGAAGATAATTTAAAGGCCTTACAAAGTGTAGGTCAAATAATAGGACAAGTATTAAAA CAGCTAGAAGATGAGAAATTTATTGTGAAAGCTTCTAGTGGTCCTAGATATGTAGTAGGA TGTAAATCTAAAATTAATAAAAGTAAATTAGTAATAGGTACAAGAGTATCATTAGATATG ACAACATTAACGGTTATGAAAAGATTACCATGTGAAGTGGATCCTTTAGTTTTTAATATG ATAAGTGATATAGATAAAAGTGAAAATAGTACAAACAAAGTTAATTATAATCAAATAGGT GGGTTAAGTGAGCAGATAAGACAGATGAGAGAAGTAGTAGAGTTACCTATACTTAATCCT TATTTATATAAAAGAGTTGGAATAAAAACACCTAAAGGTGTTTTATTATATGGTCCTCCA GGTACAGGGAAAACATTATTAGCAAGAGCAATGGCATCTAACATTAATTGTAATTTTATG AGAATTGTTGTATCAGCTATTGTAGATAAATATATAGGAGAAAGTGCACGTATTATTAGA GAGATGTTTAATTATGCAAAGGAACATCAACCATGTATTATTTTTATGGATGAAATTGAT GCTATAGGAGGTAGAAGATTTTCTCAAGGTACTTCAGCTGATAGAGAAATACAGAGAACG CTTATGGAATTATTAAATCACCTAGATGGATTTGAAGAATTAGGTAATGTCAAAATTATT ATGGCTACTAATCGACCAGATGTATTAGATCCTGCTTTAGTTAGACCAGGAAGATTAGAT AGAAAAATTGAAATACCATTACCAAATGAAACAGCCAGAATAGAAATACTTAAAATACAT GCTAATAAAATGACTAAACTAGGAGATATAGATTATGAATCTGTATGTAGATTGTGTGAT GGATTTAATGGTGCTGATTTAAGAAATGTTTGTACGGAAGCTGGTATGTTTGCAATTAGA GCTATGAGGGATTATGTTATAGAGGAAGATTTTTATAAAGCTGCCAGAAAAATAAGTGAA GGAAAAAAATTAGAGGGTAAAATTGAATATGAAAAAATATAA
  • Download Fasta

  • Fasta :-

    MDNKESIKLYVKKVIEHREIESKVKKLRLDIKELNKKYEKTEDNLKALQSVGQIIGQVLK QLEDEKFIVKASSGPRYVVGCKSKINKSKLVIGTRVSLDMTTLTVMKRLPCEVDPLVFNM ISDIDKSENSTNKVNYNQIGGLSEQIRQMREVVELPILNPYLYKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALVRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR AMRDYVIEEDFYKAARKISEGKKLEGKIEYEKI

  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N284
No Results
No Results
IDSitePeptideScoreMethod
PF3D7_1306400248 SGRRFSQGTS0.994unsp

PF13_0033      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India