PF3D7_1311500 | 26S protease regulatory subunit 7, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1311500OTHER0.9998690.0000160.000115
No Results

  • Fasta :-

    >PF3D7_1311500 MEEETNTQSKPLDDEDINILKSYGSGPYSKTIKKVEGDISGLLVNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINADTDQTKYIINVKQIAKFVVGLGDKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1311500.fa Sequence name : PF3D7_1311500 Sequence length : 420 VALUES OF COMPUTED PARAMETERS Coef20 : 2.792 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.406 1.247 0.094 0.454 MesoH : -0.783 0.330 -0.349 0.172 MuHd_075 : 12.925 9.332 3.128 3.391 MuHd_095 : 22.837 13.959 6.600 3.667 MuHd_100 : 18.948 8.592 4.604 2.474 MuHd_105 : 15.758 2.840 2.541 1.688 Hmax_075 : -10.412 -2.275 -4.845 0.691 Hmax_095 : -9.975 -1.575 -4.280 0.324 Hmax_100 : -13.300 -6.300 -6.002 -0.520 Hmax_105 : -12.500 -6.300 -6.141 -0.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9901 0.0099 DFMC : 0.9934 0.0066
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 420 PF3D7_1311500 MEEETNTQSKPLDDEDINILKSYGSGPYSKTIKKVEGDISGLLVNINKLCGVRESDTGLCLPNQWDLQLDKQMLNEEQPL 80 QVARCTKIINADTDQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDIT 160 YNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG 240 ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVR 320 PGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAI 400 NKVIHGCKQFSATGKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1311500 10 ETNTQSK|PL 0.080 . PF3D7_1311500 21 EDINILK|SY 0.085 . PF3D7_1311500 30 GSGPYSK|TI 0.087 . PF3D7_1311500 33 PYSKTIK|KV 0.095 . PF3D7_1311500 34 YSKTIKK|VE 0.096 . PF3D7_1311500 48 LLVNINK|LC 0.066 . PF3D7_1311500 53 NKLCGVR|ES 0.087 . PF3D7_1311500 71 WDLQLDK|QM 0.057 . PF3D7_1311500 84 QPLQVAR|CT 0.120 . PF3D7_1311500 87 QVARCTK|II 0.155 . PF3D7_1311500 97 ADTDQTK|YI 0.072 . PF3D7_1311500 103 KYIINVK|QI 0.064 . PF3D7_1311500 107 NVKQIAK|FV 0.078 . PF3D7_1311500 115 VVGLGDK|VA 0.054 . PF3D7_1311500 126 DIEEGMR|VG 0.065 . PF3D7_1311500 131 MRVGVDR|TK 0.130 . PF3D7_1311500 133 VGVDRTK|YK 0.069 . PF3D7_1311500 135 VDRTKYK|IQ 0.064 . PF3D7_1311500 143 QILLPPK|ID 0.059 . PF3D7_1311500 156 MMTVEEK|PD 0.062 . PF3D7_1311500 168 NDIGGCK|EQ 0.057 . PF3D7_1311500 173 CKEQLEK|LR 0.063 . PF3D7_1311500 175 EQLEKLR|EV 0.093 . PF3D7_1311500 187 PLLQPER|FV 0.119 . PF3D7_1311500 197 LGIDPPK|GV 0.077 . PF3D7_1311500 209 GPPGTGK|TL 0.062 . PF3D7_1311500 214 GKTLTAR|AI 0.092 . PF3D7_1311500 219 ARAIANR|TD 0.083 . PF3D7_1311500 235 GSELVQK|YV 0.154 . PF3D7_1311500 242 YVGEGAR|MV 0.138 . PF3D7_1311500 245 EGARMVR|EL 0.264 . PF3D7_1311500 252 ELFQMAK|SK 0.081 . PF3D7_1311500 254 FQMAKSK|KA 0.080 . PF3D7_1311500 255 QMAKSKK|AC 0.109 . PF3D7_1311500 271 DAIGGSR|GD 0.087 . PF3D7_1311500 284 GDHEVQR|TM 0.110 . PF3D7_1311500 299 LDGFDNR|GN 0.125 . PF3D7_1311500 303 DNRGNIK|VL 0.061 . PF3D7_1311500 310 VLMATNR|PD 0.073 . PF3D7_1311500 320 LDSALVR|PG 0.092 . PF3D7_1311500 323 ALVRPGR|ID 0.273 . PF3D7_1311500 326 RPGRIDR|RI 0.380 . PF3D7_1311500 327 PGRIDRR|IE 0.102 . PF3D7_1311500 338 LPDLEGR|TH 0.083 . PF3D7_1311500 343 GRTHIFK|IH 0.064 . PF3D7_1311500 353 NTMNMSR|DV 0.146 . PF3D7_1311500 356 NMSRDVR|FE 0.206 . PF3D7_1311500 362 RFELLAR|LC 0.069 . PF3D7_1311500 373 STGSDIR|SV 0.274 . PF3D7_1311500 385 AGMFAIR|AR 0.085 . PF3D7_1311500 387 MFAIRAR|RK 0.112 . PF3D7_1311500 388 FAIRARR|KT 0.379 . PF3D7_1311500 389 AIRARRK|TI 0.091 . PF3D7_1311500 394 RKTITEK|DL 0.070 . PF3D7_1311500 402 LLLAINK|VI 0.058 . PF3D7_1311500 408 KVIHGCK|QF 0.075 . PF3D7_1311500 415 QFSATGK|YM 0.072 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1311500 ATGGAAGAAGAAACTAACACTCAATCGAAGCCATTAGATGATGAAGATATAAATATATTG AAATCATATGGCTCTGGACCATATTCGAAGACCATTAAAAAGGTAGAAGGAGACATATCA GGACTCCTAGTTAATATAAATAAATTATGTGGTGTAAGGGAGAGTGATACAGGATTATGT TTACCAAATCAATGGGATTTACAATTAGATAAACAAATGTTAAATGAAGAACAACCTTTA CAAGTTGCAAGATGCACAAAAATTATTAATGCAGATACAGATCAAACTAAATATATTATA AATGTAAAACAAATAGCTAAATTTGTAGTAGGGTTAGGAGATAAGGTAGCACCCAGTGAT ATTGAAGAAGGAATGAGAGTAGGTGTTGATCGTACGAAATATAAAATACAAATATTATTA CCTCCAAAAATTGATCCAAGTGTCACTATGATGACAGTTGAAGAAAAACCTGATATTACG TATAATGATATTGGAGGATGTAAAGAACAGTTAGAGAAATTAAGAGAAGTTGTTGAAATG CCTTTACTACAACCAGAAAGGTTTGTAACCCTAGGTATTGATCCACCGAAAGGAGTTTTA TTATATGGTCCTCCAGGTACAGGTAAAACCTTAACAGCTCGAGCTATAGCTAATAGAACA GATGCATGTTTTATTTGTGTTATTGGTTCTGAATTAGTTCAGAAATATGTTGGAGAAGGT GCTAGAATGGTTAGAGAATTATTTCAAATGGCTAAATCTAAAAAAGCATGTATTTTATTT ATTGATGAAGTTGATGCTATTGGAGGTTCAAGAGGTGATGAAAGTGCTCATGGAGATCAT GAAGTACAAAGAACCATGTTAGAAATAGTTAATCAATTAGATGGTTTTGACAATAGAGGT AATATTAAGGTTTTGATGGCTACCAATAGACCAGATACCTTAGATAGTGCTTTAGTTAGA CCTGGTAGAATTGATCGTAGAATTGAATTTAGTTTACCCGATTTAGAAGGTAGAACACAT ATATTCAAAATACATGCTAATACTATGAATATGAGTAGAGATGTAAGATTTGAACTCTTA GCTAGATTATGTCCTAACAGTACAGGGTCAGATATAAGAAGTGTTTGTACAGAAGCAGGT ATGTTTGCCATAAGAGCAAGAAGAAAAACTATTACAGAAAAAGATCTCTTGTTAGCAATT AATAAGGTTATACATGGATGTAAACAATTCTCAGCAACAGGAAAATATATGGTATACAAT TAG
  • Download Fasta

  • Fasta :-

    MEEETNTQSKPLDDEDINILKSYGSGPYSKTIKKVEGDISGLLVNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINADTDQTKYIINVKQIAKFVVGLGDKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVLMATNRPDTLDSALVRPGRIDRRIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN

  • title: ATP binding site
  • coordinates: P204,P205,G206,T207,G208,K209,T210,L211,D262,N309
  • pf3d7_1311500.pdb
    •
No Results
No Results
IDSitePeptideScoreMethod
PF3D7_1311500119 SKVAPSDIEE0.993unsp

PF13_0063      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India