PF3D7_1317000 | U4/U6.U5 tri-snRNP-associated protein 2, putative

UniProt_ID: Q8I6Z8

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459 GO:0008270
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes: mRNA splicing, via spliceosome spliceosomal complex assembly

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	PF3D7_1317000	OTHER	0.999994	0.000001	0.000005

No Results

Fasta :-
>PF3D7_1317000 MERKSKKNSKSEKTESASKKKKKKDDDMSEPEEDEQKINEVEDGSLLLKSDKTENNVNNN NNNNNNNDNTNYDNQKNNLLYKKRNRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGLYFQGIGKGTHAYTHSLEKNHYVFINLETCKTCCIPEGYEIVDASLNDIKYFLKPTY NKEQVEHLCYNSVLGKSLDGGDFLPGLVGLNNLKNTDYCNVIIQLICSIIPLRNTLLLYE CKENIAKNIIVVLSDLIKKIYNPRNFKGVVSPHEFLQAVGIESNKNFKIGTKKYPLDFFL WLLNKIYRHSNKMLKKRKLSTLKKKTGYMKRKLEDNEPVSKEEKKNLHDKEKIYDEMNKS DNTSNKKKEKDKWAYSNINIVDYCFDGELLIKTIKEEGNEESQENMELKFNESDNDSKDY LKNINEEEVEEEEKNKQKNDYQNIYNNTFLNLVKKNKNDLIVKIPFRTLSLKLPNAPVFK STTESNIIPQVSIFELLSKFDGETETFLQEHFKIPNTLIISKLPKYLIFTIERFSKNNFF IEKNGTIVNFVIKNLDMKDYVHEDFLSLNPVTKYNLIANIFHTGTVNQGSYKIHVLNQPT NEWYEIEDLHVISILPQLVLLPESCIQLYQRQDVKLNGDI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1317000.fa Sequence name : PF3D7_1317000 Sequence length : 640 VALUES OF COMPUTED PARAMETERS Coef20 : 3.719 CoefTot : 0.000 ChDiff : 3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.206 1.753 0.334 0.589 MesoH : -0.486 0.550 -0.299 0.246 MuHd_075 : 21.177 6.917 5.040 2.996 MuHd_095 : 20.557 8.435 4.490 4.220 MuHd_100 : 16.428 4.418 3.609 3.878 MuHd_105 : 19.945 5.167 4.210 4.190 Hmax_075 : -13.067 -9.100 -6.560 -2.345 Hmax_095 : -13.125 -8.400 -6.457 -1.978 Hmax_100 : -16.000 -11.000 -7.093 -2.160 Hmax_105 : -10.200 -6.400 -5.910 -2.150 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9195 0.0805 DFMC : 0.9267 0.0733

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 640 PF3D7_1317000 MERKSKKNSKSEKTESASKKKKKKDDDMSEPEEDEQKINEVEDGSLLLKSDKTENNVNNNNNNNNNNDNTNYDNQKNNLL 80 YKKRNRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGLYFQGIGKGTHAYTHSLEKNHYVFINLETCKTCCIPE 160 GYEIVDASLNDIKYFLKPTYNKEQVEHLCYNSVLGKSLDGGDFLPGLVGLNNLKNTDYCNVIIQLICSIIPLRNTLLLYE 240 CKENIAKNIIVVLSDLIKKIYNPRNFKGVVSPHEFLQAVGIESNKNFKIGTKKYPLDFFLWLLNKIYRHSNKMLKKRKLS 320 TLKKKTGYMKRKLEDNEPVSKEEKKNLHDKEKIYDEMNKSDNTSNKKKEKDKWAYSNINIVDYCFDGELLIKTIKEEGNE 400 ESQENMELKFNESDNDSKDYLKNINEEEVEEEEKNKQKNDYQNIYNNTFLNLVKKNKNDLIVKIPFRTLSLKLPNAPVFK 480 STTESNIIPQVSIFELLSKFDGETETFLQEHFKIPNTLIISKLPKYLIFTIERFSKNNFFIEKNGTIVNFVIKNLDMKDY 560 VHEDFLSLNPVTKYNLIANIFHTGTVNQGSYKIHVLNQPTNEWYEIEDLHVISILPQLVLLPESCIQLYQRQDVKLNGDI 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1317000 3 ----MER|KS 0.080 . PF3D7_1317000 4 ---MERK|SK 0.112 . PF3D7_1317000 6 -MERKSK|KN 0.230 . PF3D7_1317000 7 MERKSKK|NS 0.115 . PF3D7_1317000 10 KSKKNSK|SE 0.084 . PF3D7_1317000 13 KNSKSEK|TE 0.084 . PF3D7_1317000 19 KTESASK|KK 0.059 . PF3D7_1317000 20 TESASKK|KK 0.174 . PF3D7_1317000 21 ESASKKK|KK 0.113 . PF3D7_1317000 22 SASKKKK|KK 0.179 . PF3D7_1317000 23 ASKKKKK|KD 0.139 . PF3D7_1317000 24 SKKKKKK|DD 0.338 . PF3D7_1317000 37 PEEDEQK|IN 0.064 . PF3D7_1317000 49 DGSLLLK|SD 0.073 . PF3D7_1317000 52 LLLKSDK|TE 0.059 . PF3D7_1317000 76 TNYDNQK|NN 0.057 . PF3D7_1317000 82 KNNLLYK|KR 0.065 . PF3D7_1317000 83 NNLLYKK|RN 0.073 . PF3D7_1317000 84 NLLYKKR|NR 0.099 . PF3D7_1317000 86 LYKKRNR|VC 0.074 . PF3D7_1317000 92 RVCPYLR|TI 0.090 . PF3D7_1317000 96 YLRTINR|NL 0.081 . PF3D7_1317000 105 LDFDFEK|LC 0.069 . PF3D7_1317000 131 YFQGIGK|GT 0.077 . PF3D7_1317000 142 YTHSLEK|NH 0.058 . PF3D7_1317000 154 INLETCK|TC 0.061 . PF3D7_1317000 173 ASLNDIK|YF 0.056 . PF3D7_1317000 177 DIKYFLK|PT 0.068 . PF3D7_1317000 182 LKPTYNK|EQ 0.056 . PF3D7_1317000 196 YNSVLGK|SL 0.131 . PF3D7_1317000 214 VGLNNLK|NT 0.057 . PF3D7_1317000 233 CSIIPLR|NT 0.068 . PF3D7_1317000 242 LLLYECK|EN 0.063 . PF3D7_1317000 247 CKENIAK|NI 0.071 . PF3D7_1317000 258 VLSDLIK|KI 0.063 . PF3D7_1317000 259 LSDLIKK|IY 0.077 . PF3D7_1317000 264 KKIYNPR|NF 0.090 . PF3D7_1317000 267 YNPRNFK|GV 0.125 . PF3D7_1317000 285 VGIESNK|NF 0.059 . PF3D7_1317000 288 ESNKNFK|IG 0.066 . PF3D7_1317000 292 NFKIGTK|KY 0.054 . PF3D7_1317000 293 FKIGTKK|YP 0.097 . PF3D7_1317000 305 FLWLLNK|IY 0.060 . PF3D7_1317000 308 LLNKIYR|HS 0.113 . PF3D7_1317000 312 IYRHSNK|ML 0.071 . PF3D7_1317000 315 HSNKMLK|KR 0.057 . PF3D7_1317000 316 SNKMLKK|RK 0.085 . PF3D7_1317000 317 NKMLKKR|KL 0.255 . PF3D7_1317000 318 KMLKKRK|LS 0.080 . PF3D7_1317000 323 RKLSTLK|KK 0.059 . PF3D7_1317000 324 KLSTLKK|KT 0.132 . PF3D7_1317000 325 LSTLKKK|TG 0.108 . PF3D7_1317000 330 KKTGYMK|RK 0.055 . PF3D7_1317000 331 KTGYMKR|KL 0.310 . PF3D7_1317000 332 TGYMKRK|LE 0.101 . PF3D7_1317000 341 DNEPVSK|EE 0.061 . PF3D7_1317000 344 PVSKEEK|KN 0.059 . PF3D7_1317000 345 VSKEEKK|NL 0.159 . PF3D7_1317000 350 KKNLHDK|EK 0.076 . PF3D7_1317000 352 NLHDKEK|IY 0.077 . PF3D7_1317000 359 IYDEMNK|SD 0.074 . PF3D7_1317000 366 SDNTSNK|KK 0.081 . PF3D7_1317000 367 DNTSNKK|KE 0.072 . PF3D7_1317000 368 NTSNKKK|EK 0.159 . PF3D7_1317000 370 SNKKKEK|DK 0.087 . PF3D7_1317000 372 KKKEKDK|WA 0.087 . PF3D7_1317000 392 DGELLIK|TI 0.062 . PF3D7_1317000 395 LLIKTIK|EE 0.071 . PF3D7_1317000 409 QENMELK|FN 0.084 . PF3D7_1317000 418 ESDNDSK|DY 0.069 . PF3D7_1317000 422 DSKDYLK|NI 0.066 . PF3D7_1317000 434 EVEEEEK|NK 0.056 . PF3D7_1317000 436 EEEEKNK|QK 0.074 . PF3D7_1317000 438 EEKNKQK|ND 0.067 . PF3D7_1317000 454 TFLNLVK|KN 0.058 . PF3D7_1317000 455 FLNLVKK|NK 0.104 . PF3D7_1317000 457 NLVKKNK|ND 0.061 . PF3D7_1317000 463 KNDLIVK|IP 0.056 . PF3D7_1317000 467 IVKIPFR|TL 0.098 . PF3D7_1317000 472 FRTLSLK|LP 0.058 . PF3D7_1317000 480 PNAPVFK|ST 0.105 . PF3D7_1317000 499 IFELLSK|FD 0.072 . PF3D7_1317000 513 FLQEHFK|IP 0.067 . PF3D7_1317000 522 NTLIISK|LP 0.054 . PF3D7_1317000 525 IISKLPK|YL 0.078 . PF3D7_1317000 533 LIFTIER|FS 0.083 . PF3D7_1317000 536 TIERFSK|NN 0.151 . PF3D7_1317000 543 NNFFIEK|NG 0.062 . PF3D7_1317000 553 IVNFVIK|NL 0.070 . PF3D7_1317000 558 IKNLDMK|DY 0.075 . PF3D7_1317000 573 SLNPVTK|YN 0.074 . PF3D7_1317000 592 VNQGSYK|IH 0.062 . PF3D7_1317000 631 CIQLYQR|QD 0.080 . PF3D7_1317000 635 YQRQDVK|LN 0.073 . ____________________________^_________________

Fasta :-
>PF3D7_1317000 ATGGAAAGGAAATCTAAGAAGAATTCAAAAAGTGAAAAAACAGAATCTGCTTCAAAAAAG AAAAAGAAAAAGGATGATGACATGAGTGAACCAGAAGAAGATGAACAAAAAATAAATGAG GTAGAAGATGGTTCTTTATTACTTAAAAGTGATAAAACAGAAAATAATGTAAATAATAAT AATAATAATAATAATAATAATGATAATACCAATTATGATAACCAAAAGAATAACTTATTG TATAAAAAGAGAAATAGGGTGTGCCCATACCTACGTACCATTAATAGAAACCTTCTGGAT TTTGACTTTGAAAAATTGTGTAGCATCAGTTTATCAAATTTACATGTATATGCTTGTTTA GTATGTGGTTTATATTTTCAAGGGATAGGAAAAGGGACTCATGCTTATACTCATTCCTTG GAAAAAAATCATTATGTATTTATAAATTTAGAAACATGTAAAACTTGTTGCATTCCTGAA GGTTATGAAATTGTAGATGCTTCATTAAATGACATAAAGTATTTTTTAAAACCTACCTAT AACAAGGAACAAGTTGAACATTTATGTTATAATTCTGTATTAGGAAAATCGTTAGATGGT GGTGATTTTTTACCCGGATTAGTAGGTTTAAATAATTTAAAAAACACCGATTATTGTAAT GTTATTATACAATTAATATGCTCTATTATACCCTTACGTAATACTTTATTATTATATGAA TGTAAGGAAAATATAGCAAAAAATATAATAGTAGTACTCTCTGATTTAATAAAAAAAATA TATAACCCCAGAAATTTTAAAGGAGTTGTTTCTCCTCATGAATTTTTACAAGCAGTAGGA ATTGAATCAAATAAAAATTTTAAAATTGGTACGAAAAAATATCCTCTTGACTTTTTTTTA TGGTTACTTAATAAAATTTATAGACATTCTAATAAAATGTTAAAAAAAAGAAAATTATCA ACCCTTAAAAAAAAAACAGGATACATGAAAAGAAAACTAGAAGACAATGAGCCTGTTTCA AAAGAAGAAAAAAAAAATCTACATGATAAGGAAAAAATATATGATGAAATGAACAAATCA GATAATACAAGTAATAAAAAAAAGGAGAAAGATAAATGGGCATATAGTAATATTAATATA GTCGATTATTGTTTTGATGGGGAATTACTCATTAAAACAATAAAAGAAGAAGGAAATGAA GAGTCACAAGAAAATATGGAATTAAAATTTAACGAATCAGATAATGATTCAAAAGATTAT TTAAAAAATATAAACGAAGAAGAAGTAGAAGAAGAAGAAAAAAATAAACAAAAAAATGAT TATCAAAATATATATAATAATACCTTTTTAAATCTTGTAAAAAAAAATAAAAATGATTTA ATTGTAAAAATTCCTTTCCGTACATTGTCATTAAAACTACCAAATGCTCCAGTATTTAAG AGTACAACAGAAAGTAATATAATACCACAAGTATCTATTTTTGAATTGTTATCAAAGTTC GATGGAGAGACAGAAACCTTTCTACAAGAACATTTTAAAATACCGAATACATTAATAATA TCTAAATTACCCAAATATCTAATTTTTACTATTGAACGTTTTTCAAAGAATAATTTTTTT ATAGAAAAAAATGGAACAATAGTAAATTTTGTTATTAAAAACCTTGATATGAAAGATTAT GTACATGAAGATTTTCTAAGTCTAAATCCTGTAACTAAATATAATTTAATTGCAAATATT TTTCATACAGGTACAGTAAATCAAGGTTCTTATAAAATTCATGTATTAAATCAACCAACA AATGAATGGTATGAAATTGAAGACCTGCATGTTATATCTATTTTGCCGCAATTAGTTTTA TTGCCCGAATCATGTATTCAGTTATATCAGCGACAGGATGTTAAACTAAATGGGGACATA TAA
Download Fasta

Fasta :-

MERKSKKNSKSEKTESASKKKKKKDDDMSEPEEDEQKINEVEDGSLLLKSDKTENNVNNN NNNNNNNDNTNYDNQKNNLLYKKRNRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGLYFQGIGKGTHAYTHSLEKNHYVFINLETCKTCCIPEGYEIVDASLNDIKYFLKPTY NKEQVEHLCYNSVLGKSLDGGDFLPGLVGLNNLKNTDYCNVIIQLICSIIPLRNTLLLYE CKENIAKNIIVVLSDLIKKIYNPRNFKGVVSPHEFLQAVGIESNKNFKIGTKKYPLDFFL WLLNKIYRHSNKMLKKRKLSTLKKKTGYMKRKLEDNEPVSKEEKKNLHDKEKIYDEMNKS DNTSNKKKEKDKWAYSNINIVDYCFDGELLIKTIKEEGNEESQENMELKFNESDNDSKDY LKNINEEEVEEEEKNKQKNDYQNIYNNTFLNLVKKNKNDLIVKIPFRTLSLKLPNAPVFK STTESNIIPQVSIFELLSKFDGETETFLQEHFKIPNTLIISKLPKYLIFTIERFSKNNFF IEKNGTIVNFVIKNLDMKDYVHEDFLSLNPVTKYNLIANIFHTGTVNQGSYKIHVLNQPT NEWYEIEDLHVISILPQLVLLPESCIQLYQRQDVKLNGDI

No Results

title: Active Site
coordinates: N212,D217,S590,D608

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	PF3D7_1317000	11 S	KNSKSEKTE	0.993	unsp	PF3D7_1317000	11 S	KNSKSEKTE	0.993	unsp	PF3D7_1317000	11 S	KNSKSEKTE	0.993	unsp	PF3D7_1317000	18 S	TESASKKKK	0.994	unsp	PF3D7_1317000	29 S	DDDMSEPEE	0.996	unsp	PF3D7_1317000	271 S	KGVVSPHEF	0.992	unsp	PF3D7_1317000	310 S	IYRHSNKML	0.992	unsp	PF3D7_1317000	340 S	NEPVSKEEK	0.998	unsp	PF3D7_1317000	535 S	IERFSKNNF	0.991	unsp	PF3D7_1317000	5 S	MERKSKKNS	0.998	unsp	PF3D7_1317000	9 S	SKKNSKSEK	0.996	unsp

PF3D7_1317000 | U4/U6.U5 tri-snRNP-associated protein 2, putative

ID's

UniProt_ID: Q8I6Z8

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459 GO:0008270

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes: mRNA splicing, via spliceosome spliceosomal complex assembly

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

PF13_0096

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India