PF3D7_1353900 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1353900OTHER0.9999300.0000300.000040
No Results

  • Fasta :-

    >PF3D7_1353900 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPKTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYYLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYAAWKAQAIGKNAKIVQEFLEKNYQENM EQKDCIFLALKAIFEVVELSSKNVEVALLTEKDLTFIEEQEINSMVELIDQERTKNNEQN E
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1353900.fa Sequence name : PF3D7_1353900 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : -2 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.647 0.127 0.523 MesoH : -1.158 0.062 -0.560 0.129 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9770 0.0230 DFMC : 0.9749 0.0251
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PF3D7_1353900 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPKTTEKLIKLDEHNCLAFAGLNADA 80 RVLVNKTRLECQRYYLNMDEPAPVDYIAKYVAKVQQKFTHRGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYAAWKAQA 160 IGKNAKIVQEFLEKNYQENMEQKDCIFLALKAIFEVVELSSKNVEVALLTEKDLTFIEEQEINSMVELIDQERTKNNEQN 240 E 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1353900 5 --MSYDR|AI 0.082 . PF3D7_1353900 27 HALEAVK|KG 0.060 . PF3D7_1353900 28 ALEAVKK|GG 0.115 . PF3D7_1353900 36 GCAVAIK|SS 0.079 . PF3D7_1353900 47 AVLAVEK|KN 0.062 . PF3D7_1353900 48 VLAVEKK|NI 0.106 . PF3D7_1353900 52 EKKNIPK|LQ 0.063 . PF3D7_1353900 57 PKLQNPK|TT 0.063 . PF3D7_1353900 61 NPKTTEK|LI 0.063 . PF3D7_1353900 64 TTEKLIK|LD 0.068 . PF3D7_1353900 81 GLNADAR|VL 0.093 . PF3D7_1353900 86 ARVLVNK|TR 0.063 . PF3D7_1353900 88 VLVNKTR|LE 0.077 . PF3D7_1353900 93 TRLECQR|YY 0.089 . PF3D7_1353900 109 PVDYIAK|YV 0.089 . PF3D7_1353900 113 IAKYVAK|VQ 0.067 . PF3D7_1353900 117 VAKVQQK|FT 0.090 . PF3D7_1353900 121 QQKFTHR|GG 0.077 . PF3D7_1353900 125 THRGGVR|PF 0.107 . PF3D7_1353900 137 TLIAGFK|NN 0.059 . PF3D7_1353900 140 AGFKNNK|EI 0.065 . PF3D7_1353900 157 GIYAAWK|AQ 0.070 . PF3D7_1353900 163 KAQAIGK|NA 0.079 . PF3D7_1353900 166 AIGKNAK|IV 0.082 . PF3D7_1353900 174 VQEFLEK|NY 0.060 . PF3D7_1353900 183 QENMEQK|DC 0.067 . PF3D7_1353900 191 CIFLALK|AI 0.063 . PF3D7_1353900 202 VVELSSK|NV 0.076 . PF3D7_1353900 212 VALLTEK|DL 0.068 . PF3D7_1353900 233 ELIDQER|TK 0.077 . PF3D7_1353900 235 IDQERTK|NN 0.084 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1353900 ATGTCTTATGATAGAGCTATAACAGTTTTTAGTCCTGATGGACATTTGCTACAAGTAGAA CATGCCTTAGAAGCAGTTAAAAAAGGTGGTTGTGCTGTAGCTATAAAAAGTTCAAATTTC GCTGTTTTAGCAGTCGAAAAAAAGAATATACCTAAATTACAAAACCCAAAAACTACTGAA AAATTGATTAAATTAGATGAACATAATTGTTTAGCCTTTGCTGGTTTAAATGCTGATGCA AGAGTATTAGTCAATAAGACTCGATTAGAATGCCAAAGATATTATTTAAATATGGATGAA CCGGCACCTGTAGATTATATTGCAAAATATGTTGCAAAAGTACAACAGAAATTTACACAT AGGGGTGGTGTAAGACCATTTGGTATAGCCACACTAATAGCTGGTTTTAAAAACAATAAA GAAATATGTATTTATCAAACAGAACCAAGTGGTATTTATGCAGCTTGGAAAGCACAAGCT ATTGGAAAAAATGCAAAGATTGTACAAGAGTTTTTAGAAAAAAACTATCAAGAAAATATG GAACAGAAAGATTGTATATTTTTAGCTTTAAAAGCTATATTTGAGGTTGTTGAATTAAGT AGTAAAAATGTAGAAGTTGCATTACTTACAGAGAAGGATTTAACTTTTATCGAGGAACAG GAAATAAATTCAATGGTGGAATTAATTGATCAAGAAAGAACAAAGAATAATGAACAAAAT GAATAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPKTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYYLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYAAWKAQAIGKNAKIVQEFLEKNYQENM EQKDCIFLALKAIFEVVELSSKNVEVALLTEKDLTFIEEQEINSMVELIDQERTKNNEQN E

  • title: active site
  • coordinates: G30,E46,K48,K61,K163
No Results
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MAL13P1.270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India