PF3D7_1356300 | ubiquitin-conjugating enzyme E2, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1356300OTHER0.9999070.0000320.000061
No Results

  • Fasta :-

    >PF3D7_1356300 MASASRSSKELLRLQKELKDIEKENVDEIDAHMKDTNIFEWVGFIKGPSGTPYEGGHFIL DITIPNDYPYNPPKIKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENYSLYLKTASVWTKTFATVPKLEPREDIIKKITEMGFSEDQA KKALIKANWNETLALNTLLENS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1356300.fa Sequence name : PF3D7_1356300 Sequence length : 202 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : 0.752 ChDiff : -5 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.706 1.224 0.026 0.381 MesoH : -0.619 -0.008 -0.455 0.202 MuHd_075 : 6.524 4.783 2.841 1.204 MuHd_095 : 39.941 16.430 9.828 6.929 MuHd_100 : 49.687 22.987 11.800 9.376 MuHd_105 : 52.834 26.515 12.378 10.672 Hmax_075 : -8.600 1.400 -3.531 0.467 Hmax_095 : 7.100 8.100 0.084 2.710 Hmax_100 : 9.900 10.800 0.339 3.530 Hmax_105 : 14.600 13.500 2.034 4.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7546 0.2454 DFMC : 0.7582 0.2418
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 202 PF3D7_1356300 MASASRSSKELLRLQKELKDIEKENVDEIDAHMKDTNIFEWVGFIKGPSGTPYEGGHFILDITIPNDYPYNPPKIKFNTK 80 IWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENYSLYLKTASVWTKTFATVPKL 160 EPREDIIKKITEMGFSEDQAKKALIKANWNETLALNTLLENS 240 ................................................................................ 80 ................................................................................ 160 .......................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1356300 6 -MASASR|SS 0.110 . PF3D7_1356300 9 SASRSSK|EL 0.162 . PF3D7_1356300 13 SSKELLR|LQ 0.073 . PF3D7_1356300 16 ELLRLQK|EL 0.135 . PF3D7_1356300 19 RLQKELK|DI 0.095 . PF3D7_1356300 23 ELKDIEK|EN 0.064 . PF3D7_1356300 34 EIDAHMK|DT 0.080 . PF3D7_1356300 46 EWVGFIK|GP 0.066 . PF3D7_1356300 74 YPYNPPK|IK 0.069 . PF3D7_1356300 76 YNPPKIK|FN 0.074 . PF3D7_1356300 80 KIKFNTK|IW 0.079 . PF3D7_1356300 99 ICLDVLK|NE 0.052 . PF3D7_1356300 109 SPALTIR|TA 0.123 . PF3D7_1356300 134 QDAEVAK|MY 0.073 . PF3D7_1356300 137 EVAKMYK|EN 0.060 . PF3D7_1356300 145 NYSLYLK|TA 0.070 . PF3D7_1356300 152 TASVWTK|TF 0.084 . PF3D7_1356300 159 TFATVPK|LE 0.062 . PF3D7_1356300 163 VPKLEPR|ED 0.096 . PF3D7_1356300 168 PREDIIK|KI 0.069 . PF3D7_1356300 169 REDIIKK|IT 0.126 . PF3D7_1356300 181 FSEDQAK|KA 0.071 . PF3D7_1356300 182 SEDQAKK|AL 0.114 . PF3D7_1356300 186 AKKALIK|AN 0.065 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1356300 ATGGCATCGGCATCACGAAGTTCAAAAGAATTATTAAGATTACAAAAAGAATTAAAAGAT ATTGAAAAAGAAAATGTCGATGAAATTGATGCACATATGAAAGATACCAATATTTTTGAA TGGGTTGGATTTATAAAAGGACCATCTGGAACACCTTATGAGGGTGGTCATTTTATTTTA GATATAACTATACCAAATGACTATCCCTACAATCCACCAAAAATAAAATTTAACACCAAA ATATGGCATCCAAATATTTCCAGTCAAACAGGCGCTATATGTTTGGACGTTTTAAAAAAT GAATGGAGTCCAGCATTAACCATTAGAACTGCACTTTTATCGATCCAAGCACTTTTGTCT GACCCACAGCCAGATGATCCTCAGGATGCTGAAGTAGCAAAAATGTACAAGGAAAATTAT TCCCTTTATTTAAAAACAGCAAGTGTATGGACGAAAACTTTTGCAACAGTGCCTAAATTA GAGCCAAGAGAAGATATAATTAAGAAAATTACTGAAATGGGTTTCTCAGAAGATCAAGCT AAGAAAGCATTAATAAAAGCTAACTGGAATGAAACTTTGGCCTTAAATACGCTCCTAGAA AATTCGTAA
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  • Fasta :-

    MASASRSSKELLRLQKELKDIEKENVDEIDAHMKDTNIFEWVGFIKGPSGTPYEGGHFIL DITIPNDYPYNPPKIKFNTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENYSLYLKTASVWTKTFATVPKLEPREDIIKKITEMGFSEDQA KKALIKANWNETLALNTLLENS

No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PF3D7_13563007 SSASRSSKEL0.996unspPF3D7_13563008 SASRSSKELL0.996unsp

PF13_0301      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India