PF3D7_1358300 | rhomboid protease ROM7, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1358300SP0.2429050.7539610.003134CS pos: 23-24. GNC-FI. Pr: 0.9801
No Results

  • Fasta :-

    >PF3D7_1358300 MNIIVNFIYIYILFLSYYKKGNCFIHNKINYEKSRSFLTNSTKIILKKNGFKYYHLKHKK IIKPIYSLKSSINNIWNGIKSIKVKKLLGIFKSEELKRHFHNYNLSYASYIFNKCRLDRV LISINVLLYLYLNRIDKNEERKIYFHKGNLIQEQDEQKCEKYKCNYNDVYKNRNYKTFLT SIFIHKNILHLYFNMSSLISIYRLISNVYTNTQIFLIFLLSGFFSNLISYYNHFKKKNEE IYLNDIIDQNYINKKIFNFKNNKIICGSSSAIYALYGMHITHVIFFYFKNHYVINTSFLY NFFYSFISSLLLENVSHFNHIVGFLCGFVFSFLIIAFEKN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1358300.fa Sequence name : PF3D7_1358300 Sequence length : 340 VALUES OF COMPUTED PARAMETERS Coef20 : 4.105 CoefTot : -4.714 ChDiff : 28 ZoneTo : 93 KR : 19 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.635 2.718 0.589 0.958 MesoH : 0.887 1.029 -0.083 0.513 MuHd_075 : 42.843 25.769 13.260 8.742 MuHd_095 : 38.232 26.173 11.882 8.396 MuHd_100 : 37.135 34.081 12.674 10.248 MuHd_105 : 39.182 36.868 14.055 10.777 Hmax_075 : 9.567 9.917 -0.148 4.200 Hmax_095 : 14.800 20.200 0.925 5.740 Hmax_100 : 16.900 25.500 3.937 7.630 Hmax_105 : 18.900 30.683 5.445 9.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0503 0.9497 DFMC : 0.0842 0.9158 This protein is probably imported in chloroplast. f(Ser) = 0.0968 f(Arg) = 0.0108 CMi = 1.13780 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 340 PF3D7_1358300 MNIIVNFIYIYILFLSYYKKGNCFIHNKINYEKSRSFLTNSTKIILKKNGFKYYHLKHKKIIKPIYSLKSSINNIWNGIK 80 SIKVKKLLGIFKSEELKRHFHNYNLSYASYIFNKCRLDRVLISINVLLYLYLNRIDKNEERKIYFHKGNLIQEQDEQKCE 160 KYKCNYNDVYKNRNYKTFLTSIFIHKNILHLYFNMSSLISIYRLISNVYTNTQIFLIFLLSGFFSNLISYYNHFKKKNEE 240 IYLNDIIDQNYINKKIFNFKNNKIICGSSSAIYALYGMHITHVIFFYFKNHYVINTSFLYNFFYSFISSLLLENVSHFNH 320 IVGFLCGFVFSFLIIAFEKN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1358300 19 LFLSYYK|KG 0.052 . PF3D7_1358300 20 FLSYYKK|GN 0.121 . PF3D7_1358300 28 NCFIHNK|IN 0.064 . PF3D7_1358300 33 NKINYEK|SR 0.078 . PF3D7_1358300 35 INYEKSR|SF 0.129 . PF3D7_1358300 43 FLTNSTK|II 0.063 . PF3D7_1358300 47 STKIILK|KN 0.063 . PF3D7_1358300 48 TKIILKK|NG 0.115 . PF3D7_1358300 52 LKKNGFK|YY 0.066 . PF3D7_1358300 57 FKYYHLK|HK 0.071 . PF3D7_1358300 59 YYHLKHK|KI 0.073 . PF3D7_1358300 60 YHLKHKK|II 0.104 . PF3D7_1358300 63 KHKKIIK|PI 0.071 . PF3D7_1358300 69 KPIYSLK|SS 0.086 . PF3D7_1358300 80 NIWNGIK|SI 0.071 . PF3D7_1358300 83 NGIKSIK|VK 0.056 . PF3D7_1358300 85 IKSIKVK|KL 0.097 . PF3D7_1358300 86 KSIKVKK|LL 0.122 . PF3D7_1358300 92 KLLGIFK|SE 0.078 . PF3D7_1358300 97 FKSEELK|RH 0.061 . PF3D7_1358300 98 KSEELKR|HF 0.193 . PF3D7_1358300 114 ASYIFNK|CR 0.059 . PF3D7_1358300 116 YIFNKCR|LD 0.086 . PF3D7_1358300 119 NKCRLDR|VL 0.201 . PF3D7_1358300 134 LYLYLNR|ID 0.072 . PF3D7_1358300 137 YLNRIDK|NE 0.119 . PF3D7_1358300 141 IDKNEER|KI 0.087 . PF3D7_1358300 142 DKNEERK|IY 0.099 . PF3D7_1358300 147 RKIYFHK|GN 0.085 . PF3D7_1358300 158 QEQDEQK|CE 0.056 . PF3D7_1358300 161 DEQKCEK|YK 0.068 . PF3D7_1358300 163 QKCEKYK|CN 0.068 . PF3D7_1358300 171 NYNDVYK|NR 0.060 . PF3D7_1358300 173 NDVYKNR|NY 0.116 . PF3D7_1358300 176 YKNRNYK|TF 0.157 . PF3D7_1358300 186 TSIFIHK|NI 0.065 . PF3D7_1358300 203 SLISIYR|LI 0.099 . PF3D7_1358300 235 SYYNHFK|KK 0.063 . PF3D7_1358300 236 YYNHFKK|KN 0.121 . PF3D7_1358300 237 YNHFKKK|NE 0.164 . PF3D7_1358300 254 DQNYINK|KI 0.066 . PF3D7_1358300 255 QNYINKK|IF 0.092 . PF3D7_1358300 260 KKIFNFK|NN 0.068 . PF3D7_1358300 263 FNFKNNK|II 0.064 . PF3D7_1358300 289 VIFFYFK|NH 0.061 . PF3D7_1358300 339 LIIAFEK|N- 0.063 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1358300 ATGAATATTATAGTTAATTTTATATATATATATATTTTATTTTTAAGCTATTATAAAAAA GGAAATTGCTTTATTCATAACAAAATAAATTATGAAAAATCTCGAAGTTTTTTGACAAAT AGTACAAAAATAATACTTAAAAAAAATGGATTTAAATATTATCATTTAAAACATAAGAAA ATTATAAAGCCAATATATTCATTAAAATCATCTATTAATAATATATGGAATGGTATAAAA TCAATAAAAGTTAAAAAATTATTAGGGATATTTAAAAGTGAAGAATTAAAAAGACATTTT CATAATTATAACTTATCTTATGCTAGTTATATTTTTAATAAATGTAGATTAGATCGAGTA TTGATATCAATCAATGTGTTGCTTTATTTATACTTAAATAGAATTGATAAAAATGAAGAA AGGAAAATATATTTTCATAAAGGTAATTTAATACAAGAACAAGATGAACAAAAATGTGAA AAATATAAATGTAATTATAATGATGTATACAAAAATAGAAATTATAAAACATTTTTAACT TCTATTTTTATACATAAAAATATTTTACATTTATATTTTAATATGAGTTCATTAATATCC ATATATAGATTAATTTCAAATGTTTATACAAATACTCAAATATTTCTTATATTTTTATTA TCTGGATTTTTTTCAAATTTAATATCTTATTATAATCATTTTAAAAAAAAAAATGAAGAA ATATATCTTAATGATATAATAGACCAGAATTATATTAACAAAAAAATATTCAATTTTAAA AATAATAAAATTATATGTGGAAGTAGTTCAGCTATATATGCTTTATATGGAATGCATATA ACTCATGTCATCTTTTTCTATTTTAAAAATCATTATGTTATTAATACATCCTTTCTTTAT AATTTTTTTTATTCATTTATATCATCCTTACTTTTAGAAAATGTAAGTCACTTTAATCAT ATTGTTGGATTTTTATGTGGATTCGTTTTCTCATTCCTTATTATCGCCTTTGAGAAAAAC TAA
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  • Fasta :-

    MNIIVNFIYIYILFLSYYKKGNCFIHNKINYEKSRSFLTNSTKIILKKNGFKYYHLKHKK IIKPIYSLKSSINNIWNGIKSIKVKKLLGIFKSEELKRHFHNYNLSYASYIFNKCRLDRV LISINVLLYLYLNRIDKNEERKIYFHKGNLIQEQDEQKCEKYKCNYNDVYKNRNYKTFLT SIFIHKNILHLYFNMSSLISIYRLISNVYTNTQIFLIFLLSGFFSNLISYYNHFKKKNEE IYLNDIIDQNYINKKIFNFKNNKIICGSSSAIYALYGMHITHVIFFYFKNHYVINTSFLY NFFYSFISSLLLENVSHFNHIVGFLCGFVFSFLIIAFEKN

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PF13_0312      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India