PF3D7_1368100 | 26S proteasome regulatory subunit RPN11, putative

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1368100OTHER0.9997730.0001220.000105
No Results

  • Fasta :-

    >PF3D7_1368100 MAGIPSSLRELFYSFSDGNGMNNETLADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHILMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDMWTNPLKLNDFHEQK KSSDETLEDIKKLTTLYNKNLRNEMKKTSEEILLENIGKIDAKKRIQNSVETLLNESILT CIGTMANTLFF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1368100.fa Sequence name : PF3D7_1368100 Sequence length : 311 VALUES OF COMPUTED PARAMETERS Coef20 : 3.578 CoefTot : 0.119 ChDiff : -3 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.071 1.400 0.001 0.507 MesoH : -0.558 0.428 -0.371 0.245 MuHd_075 : 15.094 6.912 2.675 2.757 MuHd_095 : 34.739 23.809 8.700 7.213 MuHd_100 : 35.617 25.115 8.374 7.698 MuHd_105 : 31.388 22.999 7.043 7.162 Hmax_075 : 3.588 5.500 -0.348 4.020 Hmax_095 : 20.100 18.800 3.112 6.460 Hmax_100 : 20.500 19.200 3.367 7.120 Hmax_105 : 15.750 12.950 2.364 4.865 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6829 0.3171 DFMC : 0.7791 0.2209
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 311 PF3D7_1368100 MAGIPSSLRELFYSFSDGNGMNNETLADTSEQVYISPLALLKILKHGRAGVPMEVMGLMLGEIVDEYTIRIVDVFAMPQS 80 GNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGFGCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVID 160 CFRLINPHILMLGQEPRQTTSNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDMWTNPLKLNDFHEQK 240 KSSDETLEDIKKLTTLYNKNLRNEMKKTSEEILLENIGKIDAKKRIQNSVETLLNESILTCIGTMANTLFF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ....................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1368100 9 GIPSSLR|EL 0.079 . PF3D7_1368100 42 SPLALLK|IL 0.065 . PF3D7_1368100 45 ALLKILK|HG 0.070 . PF3D7_1368100 48 KILKHGR|AG 0.100 . PF3D7_1368100 70 VDEYTIR|IV 0.105 . PF3D7_1368100 102 NMLEELK|KT 0.069 . PF3D7_1368100 103 MLEELKK|TG 0.098 . PF3D7_1368100 106 ELKKTGR|HE 0.093 . PF3D7_1368100 133 TDVNTQK|SF 0.099 . PF3D7_1368100 141 FEQLNPR|TI 0.108 . PF3D7_1368100 154 DPIQSVK|GK 0.062 . PF3D7_1368100 156 IQSVKGK|VV 0.122 . PF3D7_1368100 163 VVIDCFR|LI 0.087 . PF3D7_1368100 177 MLGQEPR|QT 0.107 . PF3D7_1368100 188 NIGYLTK|PT 0.073 . PF3D7_1368100 200 LVHGLNR|NY 0.081 . PF3D7_1368100 210 SIVINYR|KN 0.089 . PF3D7_1368100 211 IVINYRK|NE 0.065 . PF3D7_1368100 216 RKNELEK|NM 0.060 . PF3D7_1368100 224 MLLNLHK|DM 0.066 . PF3D7_1368100 232 MWTNPLK|LN 0.062 . PF3D7_1368100 240 NDFHEQK|KS 0.065 . PF3D7_1368100 241 DFHEQKK|SS 0.185 . PF3D7_1368100 251 ETLEDIK|KL 0.054 . PF3D7_1368100 252 TLEDIKK|LT 0.082 . PF3D7_1368100 259 LTTLYNK|NL 0.057 . PF3D7_1368100 262 LYNKNLR|NE 0.083 . PF3D7_1368100 266 NLRNEMK|KT 0.083 . PF3D7_1368100 267 LRNEMKK|TS 0.155 . PF3D7_1368100 279 LLENIGK|ID 0.065 . PF3D7_1368100 283 IGKIDAK|KR 0.062 . PF3D7_1368100 284 GKIDAKK|RI 0.110 . PF3D7_1368100 285 KIDAKKR|IQ 0.211 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1368100 ATGGCGGGTATTCCATCTTCATTACGTGAATTATTCTATTCCTTTTCTGATGGGAATGGA ATGAATAATGAAACATTAGCAGATACCAGTGAACAAGTTTATATATCTCCTTTGGCTCTT CTAAAGATATTAAAACATGGACGGGCTGGAGTACCTATGGAAGTTATGGGTTTAATGTTA GGCGAAATAGTTGATGAATACACCATAAGAATTGTTGATGTGTTCGCTATGCCTCAGTCA GGTAATAGTGTAAGTGTCGAAGCAGTAGACCCAGTTTATCAAACGAATATGTTAGAGGAA TTAAAAAAAACAGGCAGACATGAAATGGTCGTTGGATGGTATCACTCGCATCCTGGTTTT GGTTGTTGGTTATCAGGTACTGATGTAAATACTCAGAAAAGTTTTGAACAATTAAATCCA AGAACTATTGGTGTTGTAGTAGATCCTATACAATCTGTTAAAGGAAAAGTTGTTATTGAT TGCTTTAGATTAATTAATCCACATATATTAATGTTAGGACAAGAACCAAGACAAACTACA TCAAATATTGGTTATTTGACTAAACCAACCTTAACAGCTTTAGTTCATGGATTAAATAGA AACTATTATTCAATTGTTATTAATTATAGAAAAAATGAATTAGAAAAAAATATGTTATTA AATTTACATAAAGATATGTGGACCAACCCCTTAAAATTAAATGATTTCCATGAACAAAAA AAAAGCTCAGATGAAACATTAGAAGATATAAAAAAATTAACTACCTTATATAATAAAAAT CTTCGTAATGAAATGAAAAAAACAAGTGAAGAAATACTTTTAGAAAATATTGGAAAAATT GATGCTAAAAAAAGAATACAAAATTCGGTTGAAACGTTGTTAAACGAATCAATTCTCACA TGTATAGGAACTATGGCAAATACTCTGTTCTTTTAA
  • Download Fasta

  • Fasta :-

    MAGIPSSLRELFYSFSDGNGMNNETLADTSEQVYISPLALLKILKHGRAGVPMEVMGLML GEIVDEYTIRIVDVFAMPQSGNSVSVEAVDPVYQTNMLEELKKTGRHEMVVGWYHSHPGF GCWLSGTDVNTQKSFEQLNPRTIGVVVDPIQSVKGKVVIDCFRLINPHILMLGQEPRQTT SNIGYLTKPTLTALVHGLNRNYYSIVINYRKNELEKNMLLNLHKDMWTNPLKLNDFHEQK KSSDETLEDIKKLTTLYNKNLRNEMKKTSEEILLENIGKIDAKKRIQNSVETLLNESILT CIGTMANTLFF

No Results
No Results
IDSitePeptideScoreMethod
PF3D7_1368100243 SQKKSSDETL0.994unsp

MAL13P1.343      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India