PF3D7_1436800 | ATP-dependent Clp protease proteolytic subunit

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1436800SP0.0123790.9799500.007671CS pos: 17-18. CKC-TK. Pr: 0.9484
No Results

  • Fasta :-

    >PF3D7_1436800 MQGLLLFMLICINFCKCTKIITRYNFITNKINIKRYKKKNNNKSPLYYSYNEHHKYNINI PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNG ITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHI LEKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1436800.fa Sequence name : PF3D7_1436800 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 4.462 CoefTot : -3.649 ChDiff : 10 ZoneTo : 81 KR : 13 DE : 1 CleavSite : 78 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.229 1.906 0.259 0.570 MesoH : -0.340 0.398 -0.234 0.240 MuHd_075 : 32.710 22.154 11.340 6.893 MuHd_095 : 29.497 19.136 8.728 6.789 MuHd_100 : 35.581 18.198 10.280 7.514 MuHd_105 : 40.266 24.270 12.362 9.029 Hmax_075 : 18.900 21.117 5.907 1.920 Hmax_095 : 18.200 17.150 2.262 5.910 Hmax_100 : 19.600 18.500 6.325 6.540 Hmax_105 : 17.400 22.000 5.731 7.350 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3115 0.6885 DFMC : 0.2498 0.7502 This protein is probably imported in mitochondria. f(Ser) = 0.0864 f(Arg) = 0.0370 CMi = 0.70922 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 PF3D7_1436800 MQGLLLFMLICINFCKCTKIITRYNFITNKINIKRYKKKNNNKSPLYYSYNEHHKYNINIPSLLLSKRIIFLSSPIYPHI 80 SEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKG 160 YRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHI 240 LEKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1436800 16 ICINFCK|CT 0.067 . PF3D7_1436800 19 NFCKCTK|II 0.061 . PF3D7_1436800 23 CTKIITR|YN 0.087 . PF3D7_1436800 30 YNFITNK|IN 0.058 . PF3D7_1436800 34 TNKINIK|RY 0.062 . PF3D7_1436800 35 NKINIKR|YK 0.193 . PF3D7_1436800 37 INIKRYK|KK 0.065 . PF3D7_1436800 38 NIKRYKK|KN 0.178 . PF3D7_1436800 39 IKRYKKK|NN 0.148 . PF3D7_1436800 43 KKKNNNK|SP 0.067 . PF3D7_1436800 55 SYNEHHK|YN 0.074 . PF3D7_1436800 67 PSLLLSK|RI 0.051 . PF3D7_1436800 68 SLLLSKR|II 0.149 . PF3D7_1436800 96 YLEYESK|RK 0.057 . PF3D7_1436800 97 LEYESKR|KP 0.119 . PF3D7_1436800 98 EYESKRK|PI 0.085 . PF3D7_1436800 114 GDIDNNK|II 0.063 . PF3D7_1436800 145 YTYCLGK|AY 0.063 . PF3D7_1436800 158 ILASSGK|KG 0.058 . PF3D7_1436800 159 LASSGKK|GY 0.116 . PF3D7_1436800 162 SGKKGYR|FS 0.085 . PF3D7_1436800 166 GYRFSLK|NS 0.084 . PF3D7_1436800 192 NIEIQNK|EI 0.063 . PF3D7_1436800 198 KEIMNTK|KK 0.060 . PF3D7_1436800 199 EIMNTKK|KV 0.145 . PF3D7_1436800 200 IMNTKKK|VI 0.135 . PF3D7_1436800 207 VIEIISK|NT 0.064 . PF3D7_1436800 211 ISKNTEK|DT 0.078 . PF3D7_1436800 222 ISNVLER|DK 0.111 . PF3D7_1436800 224 NVLERDK|YF 0.061 . PF3D7_1436800 235 DEAVDFK|LI 0.073 . PF3D7_1436800 243 IDHILEK|E- 0.065 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1436800 ATGCAAGGCCTGTTATTATTTATGTTAATTTGTATAAATTTTTGTAAATGTACAAAAATT ATAACGAGATATAATTTTATTACAAACAAAATCAATATAAAAAGATATAAAAAAAAAAAT AATAATAAAAGTCCATTATATTATTCCTATAATGAACATCACAAGTATAACATAAATATA CCTTCATTACTTTTATCTAAAAGAATTATATTTTTATCATCACCTATTTATCCTCATATA TCAGAACAAATCATATCACAGTTATTATATTTAGAATATGAATCTAAAAGAAAACCTATA CATTTATATATTAACAGTACAGGTGATATAGATAATAATAAAATAATAAATTTGAATGGT ATAACTGATGTAATATCAATAGTTGATGTAATTAATTATATATCTTCTGATGTGTATACT TATTGTCTTGGAAAAGCGTATGGAATTGCTTGTATATTAGCTAGCAGTGGAAAAAAAGGC TATCGCTTTTCTTTAAAAAATTCCTCTTTTTGTTTAAATCAATCTTATTCTATCATACCC TTTAACCAAGCAACCAATATTGAAATACAAAATAAAGAAATAATGAACACCAAAAAAAAA GTAATAGAAATAATTTCTAAAAATACAGAAAAAGATACAAATGTTATTTCAAATGTTTTA GAAAGAGATAAATATTTTAATGCAGATGAAGCAGTAGATTTTAAATTAATTGATCATATA CTTGAAAAGGAATAA
  • Download Fasta

  • Fasta :-

    MQGLLLFMLICINFCKCTKIITRYNFITNKINIKRYKKKNNNKSPLYYSYNEHHKYNINI PSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNG ITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHI LEKE

  • title: active site residues
  • coordinates: G148,N173,D223
No Results
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PF14_0348      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India