PF3D7_1452300 | DER1-like protein

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1452300SP0.0353800.9635090.001111CS pos: 19-20. IHC-KN. Pr: 0.9873
No Results

  • Fasta :-

    >PF3D7_1452300 MNFILYIAVIIIYLTNIHCKNVYNIKKLSGKNNYKYNKISNNVKRLSNMNPPYYKRKDYL NIRMNKKTIQNFHTTNQNIHYKKFKNFVNKSKNKNKLYYLYIPNNDTNSIKGKKNKQNNK VLEIYFQQKKLLAQYFNNLKSSFIYKLKNTKIITKLFLSSSLLILTLNVIGLKPEDIALH SKRVLRAFEFYRIYTSALFYGDISLYVLTNIYMLYVQSNQLENILGSSEMLSYYISQISI LSIICSYIKKPFYSTALLKSLLFVNCMLNPYQKANLIFGININNMYLPYLSILIDIIHAQ NLKASISGLLGVTSGSIYYLLNIYLYDNYNKKVFKIPKFLETYLDSYDTIEIIQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1452300.fa Sequence name : PF3D7_1452300 Sequence length : 354 VALUES OF COMPUTED PARAMETERS Coef20 : 4.293 CoefTot : -9.871 ChDiff : 32 ZoneTo : 174 KR : 34 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.841 2.112 0.309 0.771 MesoH : 0.324 0.839 -0.135 0.393 MuHd_075 : 34.133 25.788 11.396 8.088 MuHd_095 : 34.911 28.506 10.238 8.523 MuHd_100 : 37.278 26.212 10.897 8.820 MuHd_105 : 45.980 27.569 13.875 9.479 Hmax_075 : 14.300 19.300 -1.632 6.037 Hmax_095 : 1.900 17.600 -2.758 2.560 Hmax_100 : 4.200 15.600 -0.297 3.160 Hmax_105 : 4.200 11.200 -0.297 2.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0206 0.9794 DFMC : 0.0103 0.9897 This protein is probably imported in mitochondria. f(Ser) = 0.0575 f(Arg) = 0.0172 CMi = 0.61050 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 354 PF3D7_1452300 MNFILYIAVIIIYLTNIHCKNVYNIKKLSGKNNYKYNKISNNVKRLSNMNPPYYKRKDYLNIRMNKKTIQNFHTTNQNIH 80 YKKFKNFVNKSKNKNKLYYLYIPNNDTNSIKGKKNKQNNKVLEIYFQQKKLLAQYFNNLKSSFIYKLKNTKIITKLFLSS 160 SLLILTLNVIGLKPEDIALHSKRVLRAFEFYRIYTSALFYGDISLYVLTNIYMLYVQSNQLENILGSSEMLSYYISQISI 240 LSIICSYIKKPFYSTALLKSLLFVNCMLNPYQKANLIFGININNMYLPYLSILIDIIHAQNLKASISGLLGVTSGSIYYL 320 LNIYLYDNYNKKVFKIPKFLETYLDSYDTIEIIQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1452300 20 LTNIHCK|NV 0.088 . PF3D7_1452300 26 KNVYNIK|KL 0.069 . PF3D7_1452300 27 NVYNIKK|LS 0.096 . PF3D7_1452300 31 IKKLSGK|NN 0.069 . PF3D7_1452300 35 SGKNNYK|YN 0.068 . PF3D7_1452300 38 NNYKYNK|IS 0.064 . PF3D7_1452300 44 KISNNVK|RL 0.070 . PF3D7_1452300 45 ISNNVKR|LS 0.244 . PF3D7_1452300 55 MNPPYYK|RK 0.057 . PF3D7_1452300 56 NPPYYKR|KD 0.131 . PF3D7_1452300 57 PPYYKRK|DY 0.131 . PF3D7_1452300 63 KDYLNIR|MN 0.084 . PF3D7_1452300 66 LNIRMNK|KT 0.181 . PF3D7_1452300 67 NIRMNKK|TI 0.098 . PF3D7_1452300 82 NQNIHYK|KF 0.068 . PF3D7_1452300 83 QNIHYKK|FK 0.133 . PF3D7_1452300 85 IHYKKFK|NF 0.066 . PF3D7_1452300 90 FKNFVNK|SK 0.097 . PF3D7_1452300 92 NFVNKSK|NK 0.061 . PF3D7_1452300 94 VNKSKNK|NK 0.061 . PF3D7_1452300 96 KSKNKNK|LY 0.072 . PF3D7_1452300 111 NDTNSIK|GK 0.067 . PF3D7_1452300 113 TNSIKGK|KN 0.094 . PF3D7_1452300 114 NSIKGKK|NK 0.079 . PF3D7_1452300 116 IKGKKNK|QN 0.099 . PF3D7_1452300 120 KNKQNNK|VL 0.073 . PF3D7_1452300 129 EIYFQQK|KL 0.064 . PF3D7_1452300 130 IYFQQKK|LL 0.093 . PF3D7_1452300 140 QYFNNLK|SS 0.062 . PF3D7_1452300 146 KSSFIYK|LK 0.079 . PF3D7_1452300 148 SFIYKLK|NT 0.068 . PF3D7_1452300 151 YKLKNTK|II 0.064 . PF3D7_1452300 155 NTKIITK|LF 0.054 . PF3D7_1452300 173 LNVIGLK|PE 0.065 . PF3D7_1452300 182 DIALHSK|RV 0.069 . PF3D7_1452300 183 IALHSKR|VL 0.225 . PF3D7_1452300 186 HSKRVLR|AF 0.310 . PF3D7_1452300 192 RAFEFYR|IY 0.099 . PF3D7_1452300 249 IICSYIK|KP 0.056 . PF3D7_1452300 250 ICSYIKK|PF 0.088 . PF3D7_1452300 259 YSTALLK|SL 0.075 . PF3D7_1452300 273 MLNPYQK|AN 0.064 . PF3D7_1452300 303 IHAQNLK|AS 0.066 . PF3D7_1452300 331 LYDNYNK|KV 0.073 . PF3D7_1452300 332 YDNYNKK|VF 0.079 . PF3D7_1452300 335 YNKKVFK|IP 0.064 . PF3D7_1452300 338 KVFKIPK|FL 0.094 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1452300 ATGAATTTCATTCTTTATATAGCAGTAATTATTATATACTTAACCAACATACACTGCAAA AATGTATATAACATAAAAAAATTAAGTGGAAAGAATAATTATAAGTACAATAAAATATCG AACAATGTAAAACGATTAAGTAATATGAATCCTCCATATTATAAAAGGAAAGATTATTTA AATATAAGAATGAACAAGAAAACGATACAAAATTTCCACACAACCAATCAGAATATACAT TATAAAAAATTTAAGAACTTTGTCAATAAATCTAAAAATAAGAATAAATTATATTATTTA TATATACCTAATAATGATACAAATTCAATAAAAGGAAAGAAAAACAAACAAAATAACAAA GTATTAGAAATATATTTTCAGCAAAAAAAACTACTTGCACAATATTTTAATAATTTGAAA TCCTCATTTATATATAAATTAAAAAACACAAAAATTATAACGAAATTATTTTTATCATCA TCATTATTAATATTAACATTAAATGTAATTGGTTTAAAACCTGAAGATATTGCATTACAT AGTAAAAGAGTTTTGAGAGCATTTGAATTTTATAGAATTTATACATCGGCTTTATTTTAT GGAGATATTTCTCTATACGTTTTAACAAATATATATATGTTATATGTACAAAGTAATCAA TTAGAAAATATACTTGGATCATCTGAAATGCTATCTTATTATATATCACAGATTAGCATT TTATCTATTATATGTTCATATATTAAAAAACCATTTTATTCAACAGCTTTATTAAAATCA TTATTATTTGTTAATTGTATGCTTAATCCATATCAAAAAGCTAACTTAATCTTTGGAATT AATATTAATAACATGTACTTGCCTTATCTGTCTATATTAATCGATATTATACATGCACAA AATTTAAAAGCATCTATATCCGGATTATTAGGAGTAACAAGTGGATCCATATATTATCTT CTCAATATTTACTTATATGATAATTATAATAAAAAAGTGTTCAAAATACCAAAATTTCTA GAAACTTATCTCGATTCTTATGATACAATCGAAATAATACAATAA
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  • Fasta :-

    MNFILYIAVIIIYLTNIHCKNVYNIKKLSGKNNYKYNKISNNVKRLSNMNPPYYKRKDYL NIRMNKKTIQNFHTTNQNIHYKKFKNFVNKSKNKNKLYYLYIPNNDTNSIKGKKNKQNNK VLEIYFQQKKLLAQYFNNLKSSFIYKLKNTKIITKLFLSSSLLILTLNVIGLKPEDIALH SKRVLRAFEFYRIYTSALFYGDISLYVLTNIYMLYVQSNQLENILGSSEMLSYYISQISI LSIICSYIKKPFYSTALLKSLLFVNCMLNPYQKANLIFGININNMYLPYLSILIDIIHAQ NLKASISGLLGVTSGSIYYLLNIYLYDNYNKKVFKIPKFLETYLDSYDTIEIIQ

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PF14_0498      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India