PF3D7_1468500 | derlin-1

_IDPredictionOTHERSPmTPCS_Position
PF3D7_1468500OTHER0.9997520.0002240.000024
No Results

  • Fasta :-

    >PF3D7_1468500 MVQLSDVLGNVPLITRLYLILSFALMVLCSLDIISPLSLYLNWNLVLREHQYWRLITCFL YFGSFGIHFFWDVYVLIYYCSSLEEVTFRNNSADFLWMIILSCCMLLGVSYMFGGVYFYS SCIINVITYIWSKNNSTTRLTILFFTIRASYLPWALTLLSLIVDYNSNDNFFGILVGHIY FFFTSIFPHMPIAKNTNIFKTPRVLKWLLKEESS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PF3D7_1468500.fa Sequence name : PF3D7_1468500 Sequence length : 214 VALUES OF COMPUTED PARAMETERS Coef20 : 4.156 CoefTot : -0.613 ChDiff : 1 ZoneTo : 71 KR : 3 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.265 2.341 0.512 0.835 MesoH : 0.948 1.126 0.071 0.499 MuHd_075 : 29.355 23.097 8.134 7.061 MuHd_095 : 22.008 16.706 6.066 5.591 MuHd_100 : 24.440 19.796 7.155 7.058 MuHd_105 : 33.055 22.633 7.859 8.035 Hmax_075 : 7.000 13.400 -0.241 5.210 Hmax_095 : 10.400 18.637 1.704 7.604 Hmax_100 : 20.600 17.600 4.297 7.590 Hmax_105 : 16.600 21.100 3.409 5.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9396 0.0604 DFMC : 0.9363 0.0637
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 214 PF3D7_1468500 MVQLSDVLGNVPLITRLYLILSFALMVLCSLDIISPLSLYLNWNLVLREHQYWRLITCFLYFGSFGIHFFWDVYVLIYYC 80 SSLEEVTFRNNSADFLWMIILSCCMLLGVSYMFGGVYFYSSCIINVITYIWSKNNSTTRLTILFFTIRASYLPWALTLLS 160 LIVDYNSNDNFFGILVGHIYFFFTSIFPHMPIAKNTNIFKTPRVLKWLLKEESS 240 ................................................................................ 80 ................................................................................ 160 ...................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PF3D7_1468500 16 NVPLITR|LY 0.059 . PF3D7_1468500 48 NWNLVLR|EH 0.077 . PF3D7_1468500 54 REHQYWR|LI 0.092 . PF3D7_1468500 89 LEEVTFR|NN 0.107 . PF3D7_1468500 133 ITYIWSK|NN 0.066 . PF3D7_1468500 139 KNNSTTR|LT 0.090 . PF3D7_1468500 148 ILFFTIR|AS 0.068 . PF3D7_1468500 194 PHMPIAK|NT 0.063 . PF3D7_1468500 200 KNTNIFK|TP 0.057 . PF3D7_1468500 203 NIFKTPR|VL 0.089 . PF3D7_1468500 206 KTPRVLK|WL 0.157 . PF3D7_1468500 210 VLKWLLK|EE 0.061 . ____________________________^_________________

  • Fasta :-

    >PF3D7_1468500 ATGGTTCAGTTAAGTGATGTATTAGGTAATGTACCATTAATAACTAGATTATATCTAATC CTTTCTTTTGCTTTAATGGTATTATGTTCCCTTGATATAATTTCTCCATTAAGTTTATAT CTCAATTGGAATTTAGTATTAAGAGAACATCAGTATTGGAGGCTTATCACGTGTTTTTTA TATTTTGGGTCCTTTGGTATACATTTTTTCTGGGATGTTTACGTCTTAATATATTATTGT AGCTCGTTAGAAGAGGTAACTTTCAGAAACAATTCTGCTGACTTTTTGTGGATGATTATT TTATCTTGTTGTATGCTATTAGGGGTATCATACATGTTTGGAGGTGTATATTTTTATAGT AGCTGTATAATAAATGTTATCACTTACATATGGAGTAAAAACAATTCTACAACAAGATTA ACAATACTTTTCTTTACAATTAGAGCCTCTTATTTACCATGGGCTTTAACACTCTTATCA TTAATTGTAGATTATAATTCGAATGATAATTTTTTTGGAATACTTGTTGGACACATTTAC TTTTTCTTTACGAGTATCTTCCCACATATGCCCATTGCAAAAAATACGAACATTTTTAAG ACCCCAAGAGTATTGAAGTGGTTGTTAAAAGAGGAATCGTCATAA
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  • Fasta :-

    MVQLSDVLGNVPLITRLYLILSFALMVLCSLDIISPLSLYLNWNLVLREHQYWRLITCFL YFGSFGIHFFWDVYVLIYYCSSLEEVTFRNNSADFLWMIILSCCMLLGVSYMFGGVYFYS SCIINVITYIWSKNNSTTRLTILFFTIRASYLPWALTLLSLIVDYNSNDNFFGILVGHIY FFFTSIFPHMPIAKNTNIFKTPRVLKWLLKEESS

No Results
No Results
No Results

1396.t00122      PF14_0653      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India