PKNH_0111300 | proteasome subunit alpha type-6, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0111300OTHER0.9995850.0002220.000193
No Results

  • Fasta :-

    >PKNH_0111300 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARMEAAEFLYSNGHNVNVETL CRNICDKIQIFTQHAYMRLHACSGMIIGMGEDNKPSLFKFDPSGFCAGYRACVIGNKEQE SISILERLLEKRRRKVQQETLEEDIQNTIILAIEALQTILAFDLKANEIEMGIVSKANPN FTQIGEKEIDNYLTFIAERD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0111300.fa Sequence name : PKNH_0111300 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 3.774 CoefTot : -0.108 ChDiff : -6 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.141 1.735 0.245 0.616 MesoH : -0.666 0.186 -0.361 0.155 MuHd_075 : 3.995 3.733 1.471 0.924 MuHd_095 : 33.034 14.749 5.718 7.001 MuHd_100 : 31.622 17.345 5.763 7.429 MuHd_105 : 25.289 15.162 4.748 6.403 Hmax_075 : 2.800 0.600 -2.081 1.423 Hmax_095 : 9.450 5.775 -0.465 3.098 Hmax_100 : 10.500 7.400 -0.667 3.720 Hmax_105 : 9.700 8.100 -0.439 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9416 0.0584 DFMC : 0.9712 0.0288
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 PKNH_0111300 MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQYISQDKLLDYNNITNIYNITD 80 EIGCSMVGMPGDCLSMVYKARMEAAEFLYSNGHNVNVETLCRNICDKIQIFTQHAYMRLHACSGMIIGMGEDNKPSLFKF 160 DPSGFCAGYRACVIGNKEQESISILERLLEKRRRKVQQETLEEDIQNTIILAIEALQTILAFDLKANEIEMGIVSKANPN 240 FTQIGEKEIDNYLTFIAERD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0111300 3 ----MVR|QS 0.084 . PKNH_0111300 11 SQSMYDR|HL 0.107 . PKNH_0111300 30 QIEYAIK|AV 0.070 . PKNH_0111300 33 YAIKAVK|NT 0.059 . PKNH_0111300 43 ITSIGVK|GE 0.065 . PKNH_0111300 54 AVIISQK|KM 0.059 . PKNH_0111300 55 VIISQKK|MA 0.131 . PKNH_0111300 65 QYISQDK|LL 0.063 . PKNH_0111300 99 CLSMVYK|AR 0.077 . PKNH_0111300 101 SMVYKAR|ME 0.113 . PKNH_0111300 122 NVETLCR|NI 0.093 . PKNH_0111300 127 CRNICDK|IQ 0.071 . PKNH_0111300 138 TQHAYMR|LH 0.105 . PKNH_0111300 154 GMGEDNK|PS 0.060 . PKNH_0111300 159 NKPSLFK|FD 0.068 . PKNH_0111300 170 GFCAGYR|AC 0.088 . PKNH_0111300 177 ACVIGNK|EQ 0.056 . PKNH_0111300 187 SISILER|LL 0.107 . PKNH_0111300 191 LERLLEK|RR 0.059 . PKNH_0111300 192 ERLLEKR|RR 0.145 . PKNH_0111300 193 RLLEKRR|RK 0.134 . PKNH_0111300 194 LLEKRRR|KV 0.239 . PKNH_0111300 195 LEKRRRK|VQ 0.164 . PKNH_0111300 225 ILAFDLK|AN 0.071 . PKNH_0111300 236 EMGIVSK|AN 0.061 . PKNH_0111300 247 FTQIGEK|EI 0.068 . PKNH_0111300 259 LTFIAER|D- 0.096 . ____________________________^_________________

  • Fasta :-

    >PKNH_0111300 ATGGTGAGACAGTCGCAGAGCATGTACGATAGGCACCTAACTATCTTCTCCCCCGATGGG AACCTCTACCAGATTGAATACGCGATTAAGGCTGTGAAGAACACCAACATAACGTCAATC GGCGTGAAAGGAGAAAACTGTGCCGTAATAATTTCCCAAAAAAAAATGGCAACGCAGTAC ATCTCGCAAGACAAACTCCTAGATTACAACAATATTACGAACATCTATAACATAACCGAT GAAATAGGATGCTCCATGGTGGGAATGCCTGGGGATTGCCTCAGCATGGTGTATAAGGCT AGGATGGAGGCCGCCGAGTTCTTGTATTCCAATGGACACAACGTTAACGTGGAAACCTTG TGCAGGAACATTTGCGACAAAATCCAGATTTTCACTCAGCACGCCTACATGAGGCTGCAC GCTTGCAGCGGAATGATCATAGGCATGGGCGAGGACAACAAACCGAGCCTGTTCAAGTTC GATCCGTCTGGGTTCTGCGCAGGCTATCGCGCGTGTGTGATTGGCAACAAGGAACAAGAA AGCATAAGCATATTGGAGAGGCTATTGGAGAAGAGAAGGAGAAAAGTACAACAGGAGACG TTAGAGGAGGATATACAAAACACCATCATCTTGGCCATTGAAGCGCTGCAGACAATTTTG GCATTTGACTTGAAGGCCAACGAAATAGAAATGGGAATCGTTTCGAAGGCGAACCCCAAC TTTACGCAAATCGGCGAGAAGGAGATCGACAATTATTTGACCTTCATCGCGGAGCGGGAT TAG
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  • Fasta :-

    MVRQSQSMYDRHLTIFSPDGNLYQIEYAIKAVKNTNITSIGVKGENCAVIISQKKMATQY ISQDKLLDYNNITNIYNITDEIGCSMVGMPGDCLSMVYKARMEAAEFLYSNGHNVNVETL CRNICDKIQIFTQHAYMRLHACSGMIIGMGEDNKPSLFKFDPSGFCAGYRACVIGNKEQE SISILERLLEKRRRKVQQETLEEDIQNTIILAIEALQTILAFDLKANEIEMGIVSKANPN FTQIGEKEIDNYLTFIAERD

  • title: active site
  • coordinates: I37,Q53,K55,N74,N176
No Results
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PK8_0670w      PKH_011080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India