PKNH_0115100 | proteasome subunit beta type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0115100OTHER0.9898410.0034840.006675
No Results

  • Fasta :-

    >PKNH_0115100 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELAD AQYLHEALTRVNVNNVMDKKSKYDVHNTKYYHSYVGRLFYNRKNKIDPLFNTIIVAGVNS QDYDDNDKDVLLYSDKHTTDEYKIINKEDLYIGFVDMHGTQFSADYMTTGYARYFALTLL RDHYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQIVKITSKGVEYEEPYFLSCDMNSR DYVYPSIMLPSTGCMW
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0115100.fa Sequence name : PKNH_0115100 Sequence length : 256 VALUES OF COMPUTED PARAMETERS Coef20 : 3.602 CoefTot : -2.266 ChDiff : -1 ZoneTo : 56 KR : 8 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.059 1.053 0.053 0.451 MesoH : -1.040 0.001 -0.547 0.108 MuHd_075 : 32.563 15.761 8.639 6.344 MuHd_095 : 34.334 21.451 9.472 7.909 MuHd_100 : 39.557 25.697 11.196 9.643 MuHd_105 : 41.099 25.246 11.452 9.784 Hmax_075 : 5.100 5.300 -0.561 3.140 Hmax_095 : 5.863 9.363 -0.724 3.728 Hmax_100 : 14.600 17.800 1.706 6.420 Hmax_105 : 13.825 14.963 1.420 5.574 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8139 0.1861 DFMC : 0.7233 0.2767
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 256 PKNH_0115100 MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELADAQYLHEALTRVNVNNVMDKK 80 SKYDVHNTKYYHSYVGRLFYNRKNKIDPLFNTIIVAGVNSQDYDDNDKDVLLYSDKHTTDEYKIINKEDLYIGFVDMHGT 160 QFSADYMTTGYARYFALTLLRDHYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQIVKITSKGVEYEEPYFLSCDMNSR 240 DYVYPSIMLPSTGCMW 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0115100 16 TSVIALK|YK 0.078 . PKNH_0115100 18 VIALKYK|HG 0.065 . PKNH_0115100 27 ILIAADK|KA 0.069 . PKNH_0115100 28 LIAADKK|AS 0.098 . PKNH_0115100 36 SYGSYAK|FQ 0.063 . PKNH_0115100 42 KFQNVER|IF 0.087 . PKNH_0115100 45 NVERIFK|IN 0.110 . PKNH_0115100 49 IFKINNK|TV 0.065 . PKNH_0115100 70 LHEALTR|VN 0.075 . PKNH_0115100 79 VNNVMDK|KS 0.065 . PKNH_0115100 80 NNVMDKK|SK 0.174 . PKNH_0115100 82 VMDKKSK|YD 0.064 . PKNH_0115100 89 YDVHNTK|YY 0.070 . PKNH_0115100 97 YHSYVGR|LF 0.090 . PKNH_0115100 102 GRLFYNR|KN 0.071 . PKNH_0115100 103 RLFYNRK|NK 0.083 . PKNH_0115100 105 FYNRKNK|ID 0.106 . PKNH_0115100 128 DYDDNDK|DV 0.060 . PKNH_0115100 136 VLLYSDK|HT 0.067 . PKNH_0115100 143 HTTDEYK|II 0.065 . PKNH_0115100 147 EYKIINK|ED 0.055 . PKNH_0115100 173 MTTGYAR|YF 0.075 . PKNH_0115100 181 FALTLLR|DH 0.084 . PKNH_0115100 185 LLRDHYK|DY 0.105 . PKNH_0115100 194 MTEEEAK|TL 0.058 . PKNH_0115100 202 LLNECLR|VL 0.076 . PKNH_0115100 207 LRVLYYR|DA 0.178 . PKNH_0115100 214 DATASNK|IQ 0.060 . PKNH_0115100 219 NKIQIVK|IT 0.081 . PKNH_0115100 223 IVKITSK|GV 0.099 . PKNH_0115100 240 SCDMNSR|DY 0.076 . ____________________________^_________________

  • Fasta :-

    >PKNH_0115100 ATGACGCTAGGCCCGGTGGTTACGGGCACGTCAGTCATTGCCCTCAAGTACAAACATGGC ATTCTGATCGCGGCTGACAAGAAGGCGAGTTACGGGAGCTACGCCAAGTTCCAGAACGTG GAGCGCATTTTCAAGATCAACAACAAGACGGTGATGAGTTTCAGCGGAGAGCTGGCAGAC GCGCAGTACCTGCACGAGGCGCTCACCCGGGTTAACGTAAACAACGTGATGGACAAGAAG AGCAAGTACGACGTGCACAACACCAAGTATTATCATTCTTATGTGGGTAGGCTCTTTTAT AACCGGAAGAATAAGATCGACCCTCTTTTCAATACAATCATCGTTGCGGGGGTGAACTCA CAAGATTACGATGACAACGACAAGGACGTGTTACTCTATTCTGACAAACACACGACTGAT GAGTATAAGATAATAAATAAGGAAGACCTATACATTGGCTTCGTTGATATGCATGGAACT CAGTTTTCCGCAGATTATATGACCACCGGGTATGCTCGTTACTTCGCTTTAACGCTCCTT CGTGATCATTATAAGGATTACATGACCGAGGAAGAAGCAAAAACCCTGTTGAATGAGTGC CTACGAGTACTTTACTACCGGGACGCCACAGCATCGAACAAAATACAAATTGTTAAAATT ACTAGTAAGGGGGTGGAGTACGAGGAGCCCTACTTCCTCTCCTGCGATATGAATTCCCGC GATTATGTTTATCCTTCGATTATGCTCCCGTCCACTGGATGCATGTGGTAA
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  • Fasta :-

    MTLGPVVTGTSVIALKYKHGILIAADKKASYGSYAKFQNVERIFKINNKTVMSFSGELAD AQYLHEALTRVNVNNVMDKKSKYDVHNTKYYHSYVGRLFYNRKNKIDPLFNTIIVAGVNS QDYDDNDKDVLLYSDKHTTDEYKIINKEDLYIGFVDMHGTQFSADYMTTGYARYFALTLL RDHYKDYMTEEEAKTLLNECLRVLYYRDATASNKIQIVKITSKGVEYEEPYFLSCDMNSR DYVYPSIMLPSTGCMW

  • title: active site
  • coordinates: T10,D26,K28,R42,Y171,D208,A211,S212
No Results
No Results
No Results

PK8_0310c      PKH_011450      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India