PKNH_0205600 | proteasome subunit beta type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0205600OTHER0.9258050.0614670.012728
No Results

  • Fasta :-

    >PKNH_0205600 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKVFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTF DDEGKKIRTFEPYLTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDSIMKKKLKARMD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0205600.fa Sequence name : PKNH_0205600 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.397 CoefTot : -1.679 ChDiff : -4 ZoneTo : 48 KR : 3 DE : 1 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.518 1.571 0.476 0.527 MesoH : -0.276 0.392 -0.246 0.231 MuHd_075 : 26.249 11.323 7.656 5.637 MuHd_095 : 36.961 22.786 9.736 9.361 MuHd_100 : 33.833 23.823 9.840 9.064 MuHd_105 : 35.549 26.922 10.909 9.028 Hmax_075 : 9.975 8.983 5.460 4.188 Hmax_095 : 17.000 14.875 2.210 6.038 Hmax_100 : 18.400 16.900 3.014 6.400 Hmax_105 : 19.000 18.100 3.121 6.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8170 0.1830 DFMC : 0.8252 0.1748
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 PKNH_0205600 MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKVFKMNDYVYVGLSGLATDIQTLYELLRYRVNLYEIRQ 80 ETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTFDDEGKKIRTFEPYLTAYDLIGAKCETKDFVVNGVTSEQLY 160 GMCESLYIKDQDKDGLFETISQCLLSALDRDCLSGWGAEVYVLTPDSIMKKKLKARMD 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0205600 28 AIACDLR|LG 0.072 . PKNH_0205600 43 ISTNFTK|VF 0.058 . PKNH_0205600 46 NFTKVFK|MN 0.067 . PKNH_0205600 70 TLYELLR|YR 0.073 . PKNH_0205600 72 YELLRYR|VN 0.072 . PKNH_0205600 79 VNLYEIR|QE 0.073 . PKNH_0205600 101 SILYANR|FS 0.074 . PKNH_0205600 115 PIVVGFR|VK 0.077 . PKNH_0205600 117 VVGFRVK|HT 0.071 . PKNH_0205600 125 TFDDEGK|KI 0.069 . PKNH_0205600 126 FDDEGKK|IR 0.068 . PKNH_0205600 128 DEGKKIR|TF 0.127 . PKNH_0205600 143 YDLIGAK|CE 0.054 . PKNH_0205600 147 GAKCETK|DF 0.072 . PKNH_0205600 169 CESLYIK|DQ 0.071 . PKNH_0205600 173 YIKDQDK|DG 0.061 . PKNH_0205600 190 LLSALDR|DC 0.119 . PKNH_0205600 210 TPDSIMK|KK 0.066 . PKNH_0205600 211 PDSIMKK|KL 0.108 . PKNH_0205600 212 DSIMKKK|LK 0.094 . PKNH_0205600 214 IMKKKLK|AR 0.073 . PKNH_0205600 216 KKKLKAR|MD 0.127 . ____________________________^_________________

  • Fasta :-

    >PKNH_0205600 ATGGGCTCCATCTTCAACTACAACGGAGGGTGTGTCCTCGGAATGAGTGGCGCGCAGTGC GTAGCCATCGCGTGTGACTTGAGGCTCGGCGCAAACAACTTCACCACCATCAGTACAAAT TTCACCAAAGTATTTAAAATGAATGACTACGTATATGTGGGCCTGAGCGGGCTTGCTACA GACATTCAGACTTTGTATGAATTACTAAGGTATCGAGTTAACTTGTACGAAATTAGACAA GAGACCCCAATGGACATAGATTGTTTCGCAAATATGCTATCGAGCATTTTGTATGCCAAC CGATTCTCTCCCTACTTCGTGAACCCCATTGTGGTTGGGTTTCGCGTTAAACACACCTTC GACGATGAGGGGAAAAAAATTCGTACGTTTGAGCCCTACCTAACTGCTTACGACTTGATT GGCGCCAAGTGCGAAACAAAAGATTTTGTCGTGAATGGAGTTACCAGCGAGCAACTATAC GGGATGTGCGAGTCCCTCTACATAAAGGACCAGGACAAAGACGGCCTCTTCGAAACCATT TCTCAGTGTCTACTGAGTGCCTTGGATAGGGACTGCCTATCCGGATGGGGAGCGGAAGTT TACGTTCTAACACCCGATTCAATCATGAAGAAGAAACTGAAAGCACGAATGGACTGA
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  • Fasta :-

    MGSIFNYNGGCVLGMSGAQCVAIACDLRLGANNFTTISTNFTKVFKMNDYVYVGLSGLAT DIQTLYELLRYRVNLYEIRQETPMDIDCFANMLSSILYANRFSPYFVNPIVVGFRVKHTF DDEGKKIRTFEPYLTAYDLIGAKCETKDFVVNGVTSEQLYGMCESLYIKDQDKDGLFETI SQCLLSALDRDCLSGWGAEVYVLTPDSIMKKKLKARMD

  • title: active site
  • coordinates: G10,D26,R28,K43,V154,D191,S194,G195
No Results
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PK1_0600c      PKH_020530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India