PKNH_0505200 | 26S protease regulatory subunit 6B, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0505200OTHER0.9999940.0000020.000004
No Results

  • Fasta :-

    >PKNH_0505200 MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQMSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0505200.fa Sequence name : PKNH_0505200 Sequence length : 392 VALUES OF COMPUTED PARAMETERS Coef20 : 3.228 CoefTot : 0.000 ChDiff : 3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.041 1.124 0.033 0.542 MesoH : -0.685 0.302 -0.402 0.224 MuHd_075 : 20.586 9.162 5.664 2.823 MuHd_095 : 24.257 18.077 7.576 4.843 MuHd_100 : 25.058 18.534 7.565 5.641 MuHd_105 : 30.996 20.272 8.792 7.022 Hmax_075 : -12.367 -0.100 -4.668 0.747 Hmax_095 : -5.000 6.500 -2.717 1.960 Hmax_100 : -4.400 6.900 -2.163 2.720 Hmax_105 : -5.250 4.113 -3.070 2.467 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8554 0.1446 DFMC : 0.8751 0.1249
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 392 PKNH_0505200 MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDIIDNNYGIVSSTA 80 GSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQMSERPNVKYTDLGGLDTQKQEMREAVELPLKS 160 PELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEV 240 DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLIFQT 320 IISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAIRKNRYIITANDFEQGYRTHVRKQLRDYEFYNI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0505200 6 -MDNISK|YL 0.059 . PKNH_0505200 9 NISKYLK|EE 0.064 . PKNH_0505200 16 EEDYYIK|LK 0.053 . PKNH_0505200 18 DYYIKLK|IL 0.069 . PKNH_0505200 21 IKLKILK|KQ 0.065 . PKNH_0505200 22 KLKILKK|QI 0.112 . PKNH_0505200 35 IQEEYIK|EE 0.060 . PKNH_0505200 39 YIKEEHK|NL 0.062 . PKNH_0505200 42 EEHKNLK|RE 0.054 . PKNH_0505200 43 EHKNLKR|EL 0.136 . PKNH_0505200 47 LKRELIR|SK 0.137 . PKNH_0505200 49 RELIRSK|NE 0.059 . PKNH_0505200 53 RSKNEIK|RI 0.066 . PKNH_0505200 54 SKNEIKR|IQ 0.190 . PKNH_0505200 87 GSNYYVR|IL 0.107 . PKNH_0505200 94 ILSTLNK|ED 0.058 . PKNH_0505200 98 LNKEDLK|PS 0.058 . PKNH_0505200 107 VSVALHR|HS 0.101 . PKNH_0505200 132 LLQMSER|PN 0.092 . PKNH_0505200 136 SERPNVK|YT 0.077 . PKNH_0505200 147 GGLDTQK|QE 0.058 . PKNH_0505200 151 TQKQEMR|EA 0.091 . PKNH_0505200 159 AVELPLK|SP 0.071 . PKNH_0505200 166 SPELYEK|IG 0.062 . PKNH_0505200 185 GPPGTGK|TM 0.058 . PKNH_0505200 190 GKTMLVK|AV 0.076 . PKNH_0505200 197 AVANETK|VT 0.075 . PKNH_0505200 211 GSEFVQK|YL 0.136 . PKNH_0505200 218 YLGEGPR|MV 0.154 . PKNH_0505200 221 EGPRMVR|DV 0.294 . PKNH_0505200 225 MVRDVFR|LA 0.128 . PKNH_0505200 228 DVFRLAR|EN 0.201 . PKNH_0505200 246 VDAIATK|RF 0.064 . PKNH_0505200 247 DAIATKR|FD 0.186 . PKNH_0505200 256 AQTGADR|EV 0.095 . PKNH_0505200 260 ADREVQR|IL 0.115 . PKNH_0505200 274 QMDGFDK|ST 0.080 . PKNH_0505200 279 DKSTNVK|VI 0.070 . PKNH_0505200 286 VIMATNR|AD 0.076 . PKNH_0505200 296 LDPALLR|PG 0.069 . PKNH_0505200 299 ALLRPGR|LD 0.217 . PKNH_0505200 302 RPGRLDR|KI 0.309 . PKNH_0505200 303 PGRLDRK|IE 0.069 . PKNH_0505200 311 EFPLPDR|KQ 0.064 . PKNH_0505200 312 FPLPDRK|QK 0.075 . PKNH_0505200 314 LPDRKQK|RL 0.141 . PKNH_0505200 315 PDRKQKR|LI 0.299 . PKNH_0505200 324 FQTIISK|MN 0.055 . PKNH_0505200 339 IENFVVR|TD 0.094 . PKNH_0505200 342 FVVRTDK|IS 0.108 . PKNH_0505200 361 AGMQAIR|KN 0.081 . PKNH_0505200 362 GMQAIRK|NR 0.079 . PKNH_0505200 364 QAIRKNR|YI 0.431 . PKNH_0505200 377 DFEQGYR|TH 0.064 . PKNH_0505200 381 GYRTHVR|KQ 0.079 . PKNH_0505200 382 YRTHVRK|QL 0.137 . PKNH_0505200 385 HVRKQLR|DY 0.126 . ____________________________^_________________

  • Fasta :-

    >PKNH_0505200 ATGGATAATATTAGCAAGTACTTGAAGGAGGAGGATTACTACATTAAGTTAAAAATATTG AAGAAGCAAATTGACATCTTGAACATACAGGAGGAGTACATCAAGGAGGAGCACAAAAAC CTGAAGAGAGAACTGATCAGGTCGAAGAACGAAATCAAGCGCATACAAAGCGTGCCACTC ATCATAGGACAATTTCTGGATATAATAGATAACAATTATGGAATAGTGAGTAGTACGGCT GGATCGAACTACTACGTTCGAATTCTTTCTACCCTGAATAAGGAAGACTTAAAACCATCA GTTAGCGTGGCGTTGCACCGACATAGTCATTCTATCGTGAATATCCTTCCATCCGAATCC GATAGCAGCATACAACTACTGCAAATGAGTGAGAGACCAAATGTCAAGTACACAGATTTG GGAGGATTAGACACACAGAAACAGGAAATGAGAGAAGCAGTTGAGTTGCCTCTAAAAAGC CCAGAGCTGTATGAAAAAATAGGAATAGAACCACCCATGGGGATCTTAATATATGGACCA CCAGGTACAGGAAAGACAATGCTTGTTAAAGCAGTAGCGAACGAGACAAAAGTTACCTTT ATCGGTGTTGTGGGTTCTGAATTTGTACAGAAGTATTTAGGAGAAGGTCCAAGAATGGTG AGAGATGTGTTCAGACTAGCCAGAGAAAATGCCCCTTCCATTATTTTTATTGATGAAGTA GATGCAATAGCGACAAAAAGGTTTGATGCACAAACAGGAGCAGACAGAGAGGTTCAAAGA ATTCTTCTCGAATTGCTCAACCAAATGGATGGGTTCGACAAGTCCACTAATGTGAAGGTT ATCATGGCAACCAACAGGGCCGATACATTAGATCCTGCGTTGTTGAGACCAGGCAGACTT GATAGAAAAATTGAGTTCCCTCTCCCCGACAGAAAACAAAAAAGACTCATCTTCCAGACC ATCATTAGCAAGATGAATGTCAGCAGCGATGTAAACATAGAAAACTTCGTTGTCAGAACG GATAAAATAAGCGCTGCCGACATTGCCGCCATCGCACAGGAGGCAGGCATGCAAGCTATA CGGAAGAACCGCTATATCATCACAGCTAACGATTTTGAACAGGGTTACCGCACACATGTT CGAAAGCAACTACGGGATTATGAGTTTTACAACATATAA
  • Download Fasta

  • Fasta :-

    MDNISKYLKEEDYYIKLKILKKQIDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPL IIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSES DSSIQLLQMSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILIYGP PGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEV DAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRL DRKIEFPLPDRKQKRLIFQTIISKMNVSSDVNIENFVVRTDKISAADIAAIAQEAGMQAI RKNRYIITANDFEQGYRTHVRKQLRDYEFYNI

    No Results
  • title: ATP binding site
  • coordinates: P180,P181,G182,T183,G184,K185,T186,M187,D238,N285
No Results
No Results
No Results

PK8_1560w      PKH_051730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India