PKNH_0512000 | conserved Plasmodium protein, unknown function

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_IDPredictionOTHERSPmTPCS_Position
PKNH_0512000OTHER0.9999880.0000090.000003
No Results

  • Fasta :-

    >PKNH_0512000 MADPLGEATCRSVERIFDAVPFNKSDRKRLQFEDKKLNHFFENGILNYSLVEVVGPSGSG KTQFALTLCADILLKIIQQERQAIVLYVYFNRMFPIGRLEEIIRGKLELRQRRIQGDTED NVSSFKGAHGRDEAYYCFQGGNEKRTEQIEGSGQVGNHDQTHRDEAGRTDTNHAQNCPVR KALENLYIQKINEEKEFFQLIKKDIQYILKHHQISLLVIDSLNSLFNGNDKLEVYKKCQI FTSISQSLKQLAYENNFFLLVLNSWHPRKDYIHFSFNLFDYVINSSFSNTIIYFKKRKRK NKIDRRMIIKFSEFLRKYKSMRFEINDSGFSLP
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0512000.fa Sequence name : PKNH_0512000 Sequence length : 333 VALUES OF COMPUTED PARAMETERS Coef20 : 4.014 CoefTot : 0.141 ChDiff : 10 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.682 1.282 0.000 0.439 MesoH : -0.754 0.333 -0.431 0.204 MuHd_075 : 1.281 3.785 2.066 2.213 MuHd_095 : 64.465 33.018 14.590 11.621 MuHd_100 : 56.813 29.768 13.833 10.157 MuHd_105 : 38.968 20.390 10.659 7.148 Hmax_075 : -6.213 3.100 -2.877 2.020 Hmax_095 : 16.975 15.662 3.550 5.679 Hmax_100 : 16.000 16.000 4.269 5.850 Hmax_105 : 12.900 12.400 2.540 4.470 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3477 0.6523 DFMC : 0.7762 0.2238
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 333 PKNH_0512000 MADPLGEATCRSVERIFDAVPFNKSDRKRLQFEDKKLNHFFENGILNYSLVEVVGPSGSGKTQFALTLCADILLKIIQQE 80 RQAIVLYVYFNRMFPIGRLEEIIRGKLELRQRRIQGDTEDNVSSFKGAHGRDEAYYCFQGGNEKRTEQIEGSGQVGNHDQ 160 THRDEAGRTDTNHAQNCPVRKALENLYIQKINEEKEFFQLIKKDIQYILKHHQISLLVIDSLNSLFNGNDKLEVYKKCQI 240 FTSISQSLKQLAYENNFFLLVLNSWHPRKDYIHFSFNLFDYVINSSFSNTIIYFKKRKRKNKIDRRMIIKFSEFLRKYKS 320 MRFEINDSGFSLP 400 ................................................................................ 80 ................................P............................................... 160 ................................................................................ 240 ................................................................................ 320 ............. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PKNH_0512000 11 LGEATCR|SV 0.244 . PKNH_0512000 15 TCRSVER|IF 0.135 . PKNH_0512000 24 DAVPFNK|SD 0.079 . PKNH_0512000 27 PFNKSDR|KR 0.088 . PKNH_0512000 28 FNKSDRK|RL 0.072 . PKNH_0512000 29 NKSDRKR|LQ 0.183 . PKNH_0512000 35 RLQFEDK|KL 0.072 . PKNH_0512000 36 LQFEDKK|LN 0.085 . PKNH_0512000 61 GPSGSGK|TQ 0.079 . PKNH_0512000 75 CADILLK|II 0.062 . PKNH_0512000 81 KIIQQER|QA 0.089 . PKNH_0512000 92 LYVYFNR|MF 0.089 . PKNH_0512000 98 RMFPIGR|LE 0.086 . PKNH_0512000 104 RLEEIIR|GK 0.074 . PKNH_0512000 106 EEIIRGK|LE 0.057 . PKNH_0512000 110 RGKLELR|QR 0.090 . PKNH_0512000 112 KLELRQR|RI 0.078 . PKNH_0512000 113 LELRQRR|IQ 0.507 *ProP* PKNH_0512000 126 DNVSSFK|GA 0.074 . PKNH_0512000 131 FKGAHGR|DE 0.113 . PKNH_0512000 144 FQGGNEK|RT 0.071 . PKNH_0512000 145 QGGNEKR|TE 0.167 . PKNH_0512000 163 NHDQTHR|DE 0.089 . PKNH_0512000 168 HRDEAGR|TD 0.081 . PKNH_0512000 180 AQNCPVR|KA 0.105 . PKNH_0512000 181 QNCPVRK|AL 0.106 . PKNH_0512000 190 ENLYIQK|IN 0.068 . PKNH_0512000 195 QKINEEK|EF 0.063 . PKNH_0512000 202 EFFQLIK|KD 0.062 . PKNH_0512000 203 FFQLIKK|DI 0.127 . PKNH_0512000 210 DIQYILK|HH 0.064 . PKNH_0512000 231 LFNGNDK|LE 0.057 . PKNH_0512000 236 DKLEVYK|KC 0.059 . PKNH_0512000 237 KLEVYKK|CQ 0.077 . PKNH_0512000 249 SISQSLK|QL 0.072 . PKNH_0512000 268 LNSWHPR|KD 0.116 . PKNH_0512000 269 NSWHPRK|DY 0.100 . PKNH_0512000 295 NTIIYFK|KR 0.054 . PKNH_0512000 296 TIIYFKK|RK 0.095 . PKNH_0512000 297 IIYFKKR|KR 0.168 . PKNH_0512000 298 IYFKKRK|RK 0.084 . PKNH_0512000 299 YFKKRKR|KN 0.154 . PKNH_0512000 300 FKKRKRK|NK 0.290 . PKNH_0512000 302 KRKRKNK|ID 0.184 . PKNH_0512000 305 RKNKIDR|RM 0.112 . PKNH_0512000 306 KNKIDRR|MI 0.139 . PKNH_0512000 310 DRRMIIK|FS 0.073 . PKNH_0512000 316 KFSEFLR|KY 0.093 . PKNH_0512000 317 FSEFLRK|YK 0.097 . PKNH_0512000 319 EFLRKYK|SM 0.170 . PKNH_0512000 322 RKYKSMR|FE 0.095 . ____________________________^_________________

  • Fasta :-

    >PKNH_0512000 ATGGCAGATCCGTTGGGAGAAGCAACGTGCAGATCTGTGGAGCGCATCTTCGACGCCGTC CCCTTTAACAAGAGTGATAGGAAAAGGCTCCAATTCGAGGACAAGAAGCTAAACCACTTC TTCGAAAATGGGATACTGAATTATAGCCTCGTGGAGGTGGTGGGCCCGTCGGGAAGCGGA AAAACGCAGTTCGCCCTCACCCTCTGTGCAGATATCCTTTTAAAAATTATTCAACAGGAA AGACAGGCCATAGTTTTATATGTGTACTTTAATCGAATGTTCCCAATAGGGCGATTGGAA GAAATAATTCGGGGCAAGTTGGAGTTGAGGCAGAGACGTATCCAGGGGGATACAGAAGAC AATGTTAGTAGTTTCAAGGGGGCGCATGGAAGGGATGAAGCGTATTATTGCTTCCAGGGG GGGAATGAAAAGAGAACGGAGCAGATAGAGGGGTCTGGGCAAGTGGGAAACCATGACCAG ACACACCGCGATGAGGCAGGCCGGACAGACACGAACCACGCGCAGAACTGTCCAGTCCGA AAGGCCCTGGAAAATTTGTACATACAAAAAATAAACGAAGAAAAGGAATTCTTCCAGTTA ATAAAAAAAGACATACAGTACATTTTGAAACATCACCAGATTTCCCTCCTTGTGATAGAT TCACTAAATTCTCTCTTTAATGGAAATGATAAACTAGAAGTATACAAGAAGTGCCAGATT TTTACTTCCATCTCTCAATCTCTAAAACAACTGGCATACGAGAATAACTTTTTTCTATTA GTACTTAACAGTTGGCACCCACGGAAGGACTACATCCATTTTTCCTTCAACCTTTTTGAT TACGTTATTAACTCCTCCTTTTCTAACACCATCATATATTTCAAGAAGAGGAAGAGAAAG AATAAAATTGACCGCAGGATGATCATAAAATTTTCGGAATTTTTGCGCAAGTATAAATCG ATGCGCTTTGAAATTAACGACTCGGGGTTCAGCCTGCCCTAA
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  • Fasta :-

    MADPLGEATCRSVERIFDAVPFNKSDRKRLQFEDKKLNHFFENGILNYSLVEVVGPSGSG KTQFALTLCADILLKIIQQERQAIVLYVYFNRMFPIGRLEEIIRGKLELRQRRIQGDTED NVSSFKGAHGRDEAYYCFQGGNEKRTEQIEGSGQVGNHDQTHRDEAGRTDTNHAQNCPVR KALENLYIQKINEEKEFFQLIKKDIQYILKHHQISLLVIDSLNSLFNGNDKLEVYKKCQI FTSISQSLKQLAYENNFFLLVLNSWHPRKDYIHFSFNLFDYVINSSFSNTIIYFKKRKRK NKIDRRMIIKFSEFLRKYKSMRFEINDSGFSLP

  • title: ATP binding site
  • coordinates: P56,G60,K61,T62,Y87,Y89,F90,D220,S221
No Results
No Results
No Results

PK4_1530c      PKH_052360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India