PKNH_0732300 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0732300mTP0.1211230.0000430.878834CS pos: 9-10. RRY-SS. Pr: 0.7234
No Results

  • Fasta :-

    >PKNH_0732300 MLGRTLRRYSSLKSLPKEILNQPVTRVTELPNKLKIATVKSTCEVPTIGIWISSGSKYEN KHNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDIKWC IELLSDILSNSIFDENLINMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHPLGYTILG PVENIKNMNRENIINYINTNYTSDRMVLCAVGDVEHEQVVKLAEQHFSHLKPQATNMGSA SNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEE GILPGKLSANRTVNNICNKMTIGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELM FGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEISRQILVYGRNIPLAEFLLRL EKIDTEEVKRVAWKHLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0732300.fa Sequence name : PKNH_0732300 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 4.456 CoefTot : 0.343 ChDiff : -8 ZoneTo : 17 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.182 1.141 0.080 0.502 MesoH : -0.313 0.316 -0.291 0.246 MuHd_075 : 51.636 24.248 12.449 9.084 MuHd_095 : 12.895 3.802 0.541 3.328 MuHd_100 : 26.182 13.351 5.237 6.162 MuHd_105 : 35.560 20.209 8.600 8.954 Hmax_075 : 13.300 8.400 1.238 2.835 Hmax_095 : -6.563 -0.963 -3.624 0.149 Hmax_100 : 0.500 3.900 -2.047 2.130 Hmax_105 : 10.150 9.100 1.107 4.235 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1738 0.8262 DFMC : 0.1137 0.8863 This protein is probably imported in mitochondria. f(Ser) = 0.1765 f(Arg) = 0.1765 CMi = 0.55659 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 PKNH_0732300 MLGRTLRRYSSLKSLPKEILNQPVTRVTELPNKLKIATVKSTCEVPTIGIWISSGSKYENKHNNGVAHFLEHMIFKGTKK 80 RNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDIKWCIELLSDILSNSIFDENLINMEKHVILREMEEVEKSKDEVI 160 FDKLHMTAFRDHPLGYTILGPVENIKNMNRENIINYINTNYTSDRMVLCAVGDVEHEQVVKLAEQHFSHLKPQATNMGSA 240 SNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEEGILPGKLSANRTVNNICNKM 320 TIGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELMFGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEI 400 SRQILVYGRNIPLAEFLLRLEKIDTEEVKRVAWKHLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0732300 4 ---MLGR|TL 0.076 . PKNH_0732300 7 MLGRTLR|RY 0.177 . PKNH_0732300 8 LGRTLRR|YS 0.125 . PKNH_0732300 13 RRYSSLK|SL 0.095 . PKNH_0732300 17 SLKSLPK|EI 0.066 . PKNH_0732300 26 LNQPVTR|VT 0.090 . PKNH_0732300 33 VTELPNK|LK 0.058 . PKNH_0732300 35 ELPNKLK|IA 0.066 . PKNH_0732300 40 LKIATVK|ST 0.103 . PKNH_0732300 57 WISSGSK|YE 0.064 . PKNH_0732300 61 GSKYENK|HN 0.074 . PKNH_0732300 76 LEHMIFK|GT 0.074 . PKNH_0732300 79 MIFKGTK|KR 0.062 . PKNH_0732300 80 IFKGTKK|RN 0.095 . PKNH_0732300 81 FKGTKKR|NR 0.218 . PKNH_0732300 83 GTKKRNR|IQ 0.090 . PKNH_0732300 88 NRIQLEK|EI 0.077 . PKNH_0732300 103 LNAYTAR|EQ 0.102 . PKNH_0732300 111 QTSYYCR|CF 0.112 . PKNH_0732300 114 YYCRCFK|DD 0.122 . PKNH_0732300 118 CFKDDIK|WC 0.059 . PKNH_0732300 142 NLINMEK|HV 0.070 . PKNH_0732300 147 EKHVILR|EM 0.137 . PKNH_0732300 154 EMEEVEK|SK 0.080 . PKNH_0732300 156 EEVEKSK|DE 0.064 . PKNH_0732300 163 DEVIFDK|LH 0.067 . PKNH_0732300 170 LHMTAFR|DH 0.096 . PKNH_0732300 186 GPVENIK|NM 0.060 . PKNH_0732300 190 NIKNMNR|EN 0.077 . PKNH_0732300 205 TNYTSDR|MV 0.163 . PKNH_0732300 221 EHEQVVK|LA 0.077 . PKNH_0732300 231 QHFSHLK|PQ 0.063 . PKNH_0732300 247 SNIDNVK|PY 0.063 . PKNH_0732300 258 GSEIIMR|DD 0.123 . PKNH_0732300 278 FEGVDWK|SP 0.087 . PKNH_0732300 296 CIIGTYK|KS 0.062 . PKNH_0732300 297 IIGTYKK|SE 0.207 . PKNH_0732300 306 EGILPGK|LS 0.054 . PKNH_0732300 311 GKLSANR|TV 0.095 . PKNH_0732300 319 VNNICNK|MT 0.073 . PKNH_0732300 379 EEVELAK|IQ 0.055 . PKNH_0732300 383 LAKIQLK|TQ 0.060 . PKNH_0732300 402 LAEEISR|QI 0.086 . PKNH_0732300 409 QILVYGR|NI 0.078 . PKNH_0732300 419 LAEFLLR|LE 0.072 . PKNH_0732300 422 FLLRLEK|ID 0.085 . PKNH_0732300 429 IDTEEVK|RV 0.069 . PKNH_0732300 430 DTEEVKR|VA 0.199 . PKNH_0732300 434 VKRVAWK|HL 0.088 . PKNH_0732300 439 WKHLHDR|EI 0.117 . PKNH_0732300 459 PQYYDLR|QK 0.075 . PKNH_0732300 461 YYDLRQK|TF 0.054 . PKNH_0732300 466 QKTFWLR|Y- 0.092 . ____________________________^_________________

  • Fasta :-

    >PKNH_0732300 ATGCTGGGGCGAACGCTCAGGAGGTACAGCTCTCTAAAGAGCCTCCCCAAGGAAATCCTG AACCAACCAGTCACACGGGTGACTGAGTTACCGAACAAGCTGAAAATAGCCACCGTCAAA AGTACGTGTGAAGTACCTACCATAGGAATCTGGATCAGTAGTGGAAGTAAGTATGAGAAC AAACACAACAATGGAGTAGCGCACTTTCTGGAACACATGATATTTAAAGGGACCAAAAAG AGAAACCGAATCCAACTGGAGAAGGAAATTGAGAACATGGGAGCACATCTGAATGCATAC ACAGCGAGGGAGCAGACCAGTTACTACTGTCGATGCTTCAAGGACGACATAAAGTGGTGT ATAGAACTCTTAAGTGACATACTATCCAACAGTATCTTCGATGAGAATCTAATAAACATG GAAAAGCATGTCATTCTCAGAGAGATGGAAGAAGTTGAAAAATCCAAGGATGAAGTCATC TTCGACAAGCTGCACATGACTGCCTTTCGGGATCATCCTCTAGGGTACACAATTTTAGGA CCAGTAGAAAACATAAAAAATATGAATCGAGAGAACATTATTAATTATATTAATACGAAT TACACATCTGACAGAATGGTTCTTTGTGCAGTGGGTGATGTGGAGCATGAACAGGTTGTA AAATTAGCTGAACAACATTTTAGTCATTTAAAACCTCAAGCTACTAATATGGGTTCTGCA TCTAATATAGATAATGTAAAACCGTATTTCTGTGGATCAGAAATTATCATGAGAGATGAT GATTCAGGACCTAGTGCACATGTAGCTGTGGCCTTTGAAGGAGTTGACTGGAAATCCCCT GATTCTATCACTTTCATGTTAATGCAATGCATAATTGGTACTTACAAAAAAAGTGAGGAA GGAATTCTCCCTGGAAAACTCTCCGCAAACAGAACCGTTAACAACATTTGCAATAAAATG ACCATCGGCTGTGCAGACTACTTTTCTGCGTTTAATACTTGCTACAACAATACGGGTTTG TTTGGATTCTACGTACAGTGTGATGAGCTAGCAGTGGAGCATGCCTTGGGAGAGCTCATG TTTGGAGTTACTTCTCTAAGTTATAGCATTACAGATGAAGAAGTTGAGCTAGCCAAAATA CAACTAAAGACACAACTAATTAATATGTTTGAATCTTCATCCACCCTAGCAGAAGAAATC TCCAGGCAGATTCTCGTGTACGGACGAAATATCCCCCTTGCGGAGTTCCTACTCAGGTTG GAGAAAATTGACACCGAAGAAGTGAAGCGGGTCGCTTGGAAGCATCTTCACGATCGGGAG ATAGCCGTTGCCGCTATGGGTGCTCTGCACGGCATGCCCCAGTACTACGATCTCAGACAG AAGACCTTCTGGCTCAGGTACTAG
  • Download Fasta

  • Fasta :-

    MLGRTLRRYSSLKSLPKEILNQPVTRVTELPNKLKIATVKSTCEVPTIGIWISSGSKYEN KHNNGVAHFLEHMIFKGTKKRNRIQLEKEIENMGAHLNAYTAREQTSYYCRCFKDDIKWC IELLSDILSNSIFDENLINMEKHVILREMEEVEKSKDEVIFDKLHMTAFRDHPLGYTILG PVENIKNMNRENIINYINTNYTSDRMVLCAVGDVEHEQVVKLAEQHFSHLKPQATNMGSA SNIDNVKPYFCGSEIIMRDDDSGPSAHVAVAFEGVDWKSPDSITFMLMQCIIGTYKKSEE GILPGKLSANRTVNNICNKMTIGCADYFSAFNTCYNNTGLFGFYVQCDELAVEHALGELM FGVTSLSYSITDEEVELAKIQLKTQLINMFESSSTLAEEISRQILVYGRNIPLAEFLLRL EKIDTEEVKRVAWKHLHDREIAVAAMGALHGMPQYYDLRQKTFWLRY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0732300369 SSLSYSITDE0.997unspPKNH_0732300369 SSLSYSITDE0.997unspPKNH_0732300369 SSLSYSITDE0.997unspPKNH_073230010 SLRRYSSLKS0.993unspPKNH_073230011 SRRYSSLKSL0.993unsp

PK9_3205c      PKH_073170      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India