PKNH_0811200 | proteasome subunit beta type-5, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0811200OTHER0.9999670.0000280.000005
No Results

  • Fasta :-

    >PKNH_0811200 MADTGGGLMSEIDNLINDMEEEEENYDELQFCVAPVRVPRNFIKDAKTKNNKLFDFHKGT TTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGK IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK NGYDKIIEGEDVYDLHYHYTNPAQNDQYVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0811200.fa Sequence name : PKNH_0811200 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.029 CoefTot : 0.141 ChDiff : -10 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.071 0.164 0.470 MesoH : -0.463 0.273 -0.288 0.222 MuHd_075 : 27.102 13.083 6.639 4.555 MuHd_095 : 35.845 25.893 9.497 6.859 MuHd_100 : 39.024 29.078 10.595 7.907 MuHd_105 : 31.393 26.473 9.311 7.254 Hmax_075 : 7.467 7.200 -1.199 3.320 Hmax_095 : 18.000 17.400 3.401 6.070 Hmax_100 : 19.600 20.000 3.620 6.760 Hmax_105 : 18.100 19.900 3.751 6.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8151 0.1849 DFMC : 0.9050 0.0950
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PKNH_0811200 MADTGGGLMSEIDNLINDMEEEEENYDELQFCVAPVRVPRNFIKDAKTKNNKLFDFHKGTTTLAFKFKDGIIVAVDSRAS 80 MGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGKIIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIIL 160 SGYDHTGFNMFYIDDEGKKVEGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK 240 NGYDKIIEGEDVYDLHYHYTNPAQNDQYVM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0811200 37 FCVAPVR|VP 0.069 . PKNH_0811200 40 APVRVPR|NF 0.291 . PKNH_0811200 44 VPRNFIK|DA 0.102 . PKNH_0811200 47 NFIKDAK|TK 0.068 . PKNH_0811200 49 IKDAKTK|NN 0.062 . PKNH_0811200 52 AKTKNNK|LF 0.060 . PKNH_0811200 58 KLFDFHK|GT 0.073 . PKNH_0811200 66 TTTLAFK|FK 0.072 . PKNH_0811200 68 TLAFKFK|DG 0.093 . PKNH_0811200 78 IVAVDSR|AS 0.099 . PKNH_0811200 92 SSQNVEK|II 0.079 . PKNH_0811200 98 KIIEINK|NI 0.058 . PKNH_0811200 116 DCLYWEK|YL 0.078 . PKNH_0811200 120 WEKYLGK|II 0.066 . PKNH_0811200 123 YLGKIIK|IY 0.065 . PKNH_0811200 128 IKIYELR|NN 0.087 . PKNH_0811200 132 ELRNNEK|IS 0.063 . PKNH_0811200 136 NEKISVR|AA 0.145 . PKNH_0811200 150 NILYQYK|GY 0.066 . PKNH_0811200 178 YIDDEGK|KV 0.078 . PKNH_0811200 179 IDDEGKK|VE 0.080 . PKNH_0811200 216 QAVELAR|NA 0.082 . PKNH_0811200 225 IYHATFR|DG 0.149 . PKNH_0811200 232 DGGSGGK|VR 0.050 . PKNH_0811200 234 GSGGKVR|VF 0.097 . PKNH_0811200 240 RVFYIHK|NG 0.059 . PKNH_0811200 245 HKNGYDK|II 0.073 . ____________________________^_________________

  • Fasta :-

    >PKNH_0811200 ATGGCAGATACCGGGGGGGGGTTGATGAGCGAAATTGATAATTTAATCAATGACATGGAA GAGGAGGAAGAAAATTACGATGAGCTGCAATTCTGTGTAGCCCCAGTCAGAGTTCCAAGA AATTTCATAAAAGATGCCAAGACAAAAAATAACAAACTCTTTGATTTTCACAAAGGTACA ACCACATTGGCCTTCAAATTTAAGGATGGAATAATAGTAGCAGTGGACTCAAGAGCTTCC ATGGGTTCTTTTATATCTTCACAAAACGTAGAGAAAATTATCGAAATAAATAAAAACATT TTAGGGACAATGGCAGGAGGAGCGGCAGACTGTTTGTATTGGGAAAAATATTTAGGAAAA ATTATAAAAATTTATGAATTGAGAAATAATGAAAAAATCTCTGTCAGAGCAGCCAGTACC ATTTTGAGTAATATTTTATATCAATATAAGGGATATGGATTATGCTGTGGAATTATTTTA AGTGGTTATGATCACACCGGTTTTAATATGTTTTACATTGATGATGAGGGGAAGAAGGTG GAGGGCAATTTATTTAGTTGTGGAAGTGGTAGCACTTATGCTTACTCCATTTTGGACTCT GCGTATGATTATAATTTGAGTCTAGAACAGGCCGTAGAACTAGCCAGGAATGCAATTTAC CATGCCACCTTCAGGGATGGCGGATCTGGTGGTAAGGTTCGAGTTTTTTACATACACAAG AATGGCTACGACAAAATTATCGAGGGGGAGGATGTGTACGATTTACATTATCATTACACG AACCCGGCGCAGAACGATCAGTACGTTATGTAG
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  • Fasta :-

    MADTGGGLMSEIDNLINDMEEEEENYDELQFCVAPVRVPRNFIKDAKTKNNKLFDFHKGT TTLAFKFKDGIIVAVDSRASMGSFISSQNVEKIIEINKNILGTMAGGAADCLYWEKYLGK IIKIYELRNNEKISVRAASTILSNILYQYKGYGLCCGIILSGYDHTGFNMFYIDDEGKKV EGNLFSCGSGSTYAYSILDSAYDYNLSLEQAVELARNAIYHATFRDGGSGGKVRVFYIHK NGYDKIIEGEDVYDLHYHYTNPAQNDQYVM

  • title: active site
  • coordinates: T60,D76,R78,K92,S189,D226,S229,G230
No Results
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PK10_1000c      PKH_081090      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India