PKNH_0824800 | proteasome subunit alpha type-3, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_0824800OTHER0.9995490.0003910.000060
No Results

  • Fasta :-

    >PKNH_0824800 MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNSALSLECRDGLITCCVNSNLLKNKM IKPNSYNRIYHINNNVMVTYAGLDGDARNIIDRAKYEANSYYLNFHTNIPLHILANRISL YIHSFTLYWHLRPFASSIILASFDEKEKGEIYCVEPNGACYKYSGVVIGKNKEMFKTEIE KRNYKEVDVKEALVDIYKMILTSDDHLNKNNLPDLLNFSWICKESSYEYQNVDTETLNEA MRLAVESMEQSNQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0824800.fa Sequence name : PKNH_0824800 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.707 CoefTot : -0.141 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 0.929 -0.019 0.448 MesoH : -0.672 0.147 -0.424 0.208 MuHd_075 : 23.497 12.390 4.947 3.001 MuHd_095 : 9.262 6.029 2.442 2.046 MuHd_100 : 4.187 5.142 0.585 1.413 MuHd_105 : 5.257 2.255 1.425 0.842 Hmax_075 : 15.517 10.267 1.459 3.885 Hmax_095 : 13.000 9.800 1.586 4.440 Hmax_100 : 13.000 9.800 1.283 3.940 Hmax_105 : 10.033 5.250 1.204 3.768 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9137 0.0863 DFMC : 0.8608 0.1392
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 PKNH_0824800 MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNSALSLECRDGLITCCVNSNLLKNKMIKPNSYNRIYHINNNVMVTY 80 AGLDGDARNIIDRAKYEANSYYLNFHTNIPLHILANRISLYIHSFTLYWHLRPFASSIILASFDEKEKGEIYCVEPNGAC 160 YKYSGVVIGKNKEMFKTEIEKRNYKEVDVKEALVDIYKMILTSDDHLNKNNLPDLLNFSWICKESSYEYQNVDTETLNEA 240 MRLAVESMEQSNQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0824800 20 TFSPDGR|LY 0.091 . PKNH_0824800 29 QVEYIYK|AI 0.063 . PKNH_0824800 43 ALSLECR|DG 0.088 . PKNH_0824800 57 VNSNLLK|NK 0.067 . PKNH_0824800 59 SNLLKNK|MI 0.068 . PKNH_0824800 62 LKNKMIK|PN 0.077 . PKNH_0824800 68 KPNSYNR|IY 0.104 . PKNH_0824800 88 GLDGDAR|NI 0.084 . PKNH_0824800 93 ARNIIDR|AK 0.108 . PKNH_0824800 95 NIIDRAK|YE 0.062 . PKNH_0824800 117 LHILANR|IS 0.074 . PKNH_0824800 132 TLYWHLR|PF 0.097 . PKNH_0824800 146 LASFDEK|EK 0.083 . PKNH_0824800 148 SFDEKEK|GE 0.057 . PKNH_0824800 162 PNGACYK|YS 0.084 . PKNH_0824800 170 SGVVIGK|NK 0.064 . PKNH_0824800 172 VVIGKNK|EM 0.064 . PKNH_0824800 176 KNKEMFK|TE 0.063 . PKNH_0824800 181 FKTEIEK|RN 0.060 . PKNH_0824800 182 KTEIEKR|NY 0.152 . PKNH_0824800 185 IEKRNYK|EV 0.255 . PKNH_0824800 190 YKEVDVK|EA 0.062 . PKNH_0824800 198 ALVDIYK|MI 0.066 . PKNH_0824800 209 SDDHLNK|NN 0.060 . PKNH_0824800 223 NFSWICK|ES 0.069 . PKNH_0824800 242 TLNEAMR|LA 0.111 . ____________________________^_________________

  • Fasta :-

    >PKNH_0824800 ATGGCAGGCCTCAGCGCAGGCTACGACCTATCCGTTTCGACCTTCTCCCCCGATGGGAGG CTCTACCAAGTGGAGTACATATACAAGGCCATCAACAACAACAACAGTGCCCTTAGTCTG GAGTGCCGAGATGGGTTAATCACCTGCTGTGTAAATTCAAATTTACTTAAGAACAAAATG ATAAAACCAAATAGCTACAATAGGATCTATCACATAAATAACAACGTGATGGTAACTTAT GCAGGACTAGATGGAGACGCGAGAAATATAATAGATCGGGCCAAGTATGAAGCGAATAGC TACTACCTTAATTTTCACACGAATATACCTTTGCACATTTTAGCTAACCGCATTTCGCTT TATATTCACTCGTTCACGTTGTACTGGCACTTGAGGCCTTTTGCCTCCTCCATCATACTG GCGTCATTCGACGAGAAGGAGAAAGGAGAAATTTACTGTGTGGAACCTAACGGAGCCTGC TACAAGTATAGCGGAGTAGTCATTGGGAAAAACAAGGAAATGTTTAAGACGGAAATAGAA AAGAGAAACTACAAAGAAGTAGATGTGAAGGAAGCTCTCGTGGATATATACAAGATGATT TTAACAAGTGATGATCATCTGAATAAAAACAACTTACCTGACCTCCTAAACTTTTCTTGG ATCTGCAAAGAATCTTCTTATGAATATCAGAATGTTGACACTGAGACGTTGAATGAAGCT ATGCGCTTGGCCGTGGAGTCGATGGAGCAGTCAAATCAGTAG
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  • Fasta :-

    MAGLSAGYDLSVSTFSPDGRLYQVEYIYKAINNNNSALSLECRDGLITCCVNSNLLKNKM IKPNSYNRIYHINNNVMVTYAGLDGDARNIIDRAKYEANSYYLNFHTNIPLHILANRISL YIHSFTLYWHLRPFASSIILASFDEKEKGEIYCVEPNGACYKYSGVVIGKNKEMFKTEIE KRNYKEVDVKEALVDIYKMILTSDDHLNKNNLPDLLNFSWICKESSYEYQNVDTETLNEA MRLAVESMEQSNQ

  • title: active site
  • coordinates: N35,S53,L55,R68
No Results
No Results
No Results

PK3_1470c      PKH_082440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India