PKNH_0827800 | DER1-like protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:  ubiquitin-dependent ERAD pathway      

_IDPredictionOTHERSPmTPCS_Position
PKNH_0827800SP0.2116690.6316600.156671CS pos: 23-24. EHA-RV. Pr: 0.2999
No Results

  • Fasta :-

    >PKNH_0827800 MFFLLRLLVSLCVIIVSVRHEHARVILSNKFAASVLNSGTRVGEPSRGTTTLKRDTTRKN GLFRSDQKQNTTSEHGYYYFTKEKNKIIKKKKKKFSLNYSRNPKVVTRGTRKKTHYPLLF ISPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTPPLTKLYLLCTFIFSIFMHAN KNIYKLIVFDFGKIFKEGQVWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPE DLLTFFSFGYLSNLLFTIIGSMYNENVLNLQGYVNKLRRLILLGGKKSSISTKANTADVI ISKQQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIVQNILLYNEFSL FEVASILSSYFFFTYEKNLQLNFLRHFNLALLKVLGIYPMYEAYKEEYE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0827800.fa Sequence name : PKNH_0827800 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 5.220 CoefTot : 0.785 ChDiff : 24 ZoneTo : 43 KR : 5 DE : 1 CleavSite : 16 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.841 2.753 0.448 0.737 MesoH : 0.212 0.828 -0.213 0.416 MuHd_075 : 34.191 22.151 8.510 9.246 MuHd_095 : 32.967 18.375 9.055 7.333 MuHd_100 : 29.374 18.286 8.353 6.589 MuHd_105 : 29.074 18.735 7.847 7.371 Hmax_075 : 11.400 15.750 -0.163 5.857 Hmax_095 : 14.087 13.300 2.590 5.163 Hmax_100 : 14.700 28.400 3.094 5.420 Hmax_105 : 12.700 26.400 2.058 4.573 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2457 0.7543 DFMC : 0.3686 0.6314 This protein is probably imported in mitochondria. f(Ser) = 0.1163 f(Arg) = 0.0930 CMi = 0.58072 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 PKNH_0827800 MFFLLRLLVSLCVIIVSVRHEHARVILSNKFAASVLNSGTRVGEPSRGTTTLKRDTTRKNGLFRSDQKQNTTSEHGYYYF 80 TKEKNKIIKKKKKKFSLNYSRNPKVVTRGTRKKTHYPLLFISPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTP 160 PLTKLYLLCTFIFSIFMHANKNIYKLIVFDFGKIFKEGQVWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPE 240 DLLTFFSFGYLSNLLFTIIGSMYNENVLNLQGYVNKLRRLILLGGKKSSISTKANTADVIISKQQYNHLGYVFSTYILYY 320 WSRINEGTLINCFELFLIKAEYVPFFFIVQNILLYNEFSLFEVASILSSYFFFTYEKNLQLNFLRHFNLALLKVLGIYPM 400 YEAYKEEYE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0827800 6 -MFFLLR|LL 0.063 . PKNH_0827800 19 VIIVSVR|HE 0.081 . PKNH_0827800 24 VRHEHAR|VI 0.120 . PKNH_0827800 30 RVILSNK|FA 0.082 . PKNH_0827800 41 VLNSGTR|VG 0.099 . PKNH_0827800 47 RVGEPSR|GT 0.091 . PKNH_0827800 53 RGTTTLK|RD 0.058 . PKNH_0827800 54 GTTTLKR|DT 0.223 . PKNH_0827800 58 LKRDTTR|KN 0.104 . PKNH_0827800 59 KRDTTRK|NG 0.067 . PKNH_0827800 64 RKNGLFR|SD 0.217 . PKNH_0827800 68 LFRSDQK|QN 0.073 . PKNH_0827800 82 GYYYFTK|EK 0.074 . PKNH_0827800 84 YYFTKEK|NK 0.057 . PKNH_0827800 86 FTKEKNK|II 0.068 . PKNH_0827800 89 EKNKIIK|KK 0.070 . PKNH_0827800 90 KNKIIKK|KK 0.077 . PKNH_0827800 91 NKIIKKK|KK 0.135 . PKNH_0827800 92 KIIKKKK|KK 0.099 . PKNH_0827800 93 IIKKKKK|KF 0.114 . PKNH_0827800 94 IKKKKKK|FS 0.123 . PKNH_0827800 101 FSLNYSR|NP 0.076 . PKNH_0827800 104 NYSRNPK|VV 0.236 . PKNH_0827800 108 NPKVVTR|GT 0.155 . PKNH_0827800 111 VVTRGTR|KK 0.150 . PKNH_0827800 112 VTRGTRK|KT 0.079 . PKNH_0827800 113 TRGTRKK|TH 0.137 . PKNH_0827800 136 EITESVK|AL 0.059 . PKNH_0827800 154 YLYSYIK|SF 0.069 . PKNH_0827800 157 SYIKSFK|RT 0.062 . PKNH_0827800 158 YIKSFKR|TP 0.092 . PKNH_0827800 164 RTPPLTK|LY 0.056 . PKNH_0827800 181 IFMHANK|NI 0.063 . PKNH_0827800 185 ANKNIYK|LI 0.060 . PKNH_0827800 193 IVFDFGK|IF 0.066 . PKNH_0827800 196 DFGKIFK|EG 0.057 . PKNH_0827800 202 KEGQVWR|LI 0.113 . PKNH_0827800 237 VEIAHYK|NP 0.073 . PKNH_0827800 276 LQGYVNK|LR 0.063 . PKNH_0827800 278 GYVNKLR|RL 0.076 . PKNH_0827800 279 YVNKLRR|LI 0.133 . PKNH_0827800 286 LILLGGK|KS 0.057 . PKNH_0827800 287 ILLGGKK|SS 0.090 . PKNH_0827800 293 KSSISTK|AN 0.085 . PKNH_0827800 303 ADVIISK|QQ 0.064 . PKNH_0827800 323 ILYYWSR|IN 0.098 . PKNH_0827800 339 FELFLIK|AE 0.053 . PKNH_0827800 377 FFFTYEK|NL 0.052 . PKNH_0827800 385 LQLNFLR|HF 0.082 . PKNH_0827800 393 FNLALLK|VL 0.063 . PKNH_0827800 405 PMYEAYK|EE 0.061 . ____________________________^_________________

  • Fasta :-

    >PKNH_0827800 ATGTTTTTTCTGCTCAGGCTACTCGTCTCTTTATGCGTAATAATCGTAAGTGTGAGGCAT GAGCACGCGAGAGTTATTTTGTCGAACAAGTTTGCGGCGAGCGTACTGAACAGCGGCACA CGTGTAGGGGAGCCATCCCGGGGGACGACGACCCTGAAGAGAGACACGACAAGGAAAAAT GGCCTCTTCAGGAGTGACCAGAAGCAAAACACGACATCAGAACATGGGTACTACTACTTT ACTAAGGAGAAAAACAAAATAATAAAAAAAAAAAAAAAAAAATTTTCACTGAATTATTCT AGAAACCCTAAAGTAGTAACAAGGGGGACAAGAAAAAAAACACACTACCCACTCCTTTTT ATATCCCCGTCATCAACATCATTGAACGAGATTACTGAAAGTGTGAAGGCTCTTTTTAAT TTAGATTACATAGAAAATAGCTACTTGTATTCCTACATCAAATCATTTAAAAGGACCCCC CCCTTAACGAAACTTTACCTTTTGTGCACCTTCATCTTCAGCATATTTATGCATGCAAAT AAAAATATATACAAGCTTATTGTATTCGATTTCGGAAAAATATTCAAGGAGGGTCAAGTA TGGAGACTAATTACACCGTATTTTTATATAGGCAATTTATATCTACAATATTTTCTCATG TTTAATTATCTACACATCTACATGTCTTCGGTTGAAATTGCACACTACAAGAACCCGGAG GACCTGCTAACATTCTTCAGTTTTGGCTACCTGTCTAATCTCCTTTTTACAATAATAGGA AGTATGTACAATGAGAACGTATTGAATCTCCAAGGCTATGTGAATAAACTTAGGAGACTC ATTTTATTAGGTGGTAAGAAGAGTAGTATTTCCACCAAGGCGAACACAGCAGATGTGATA ATATCAAAACAACAGTACAACCACCTGGGTTATGTTTTCTCTACCTACATATTGTACTAT TGGAGTCGGATCAACGAAGGTACCTTGATTAACTGTTTTGAGCTTTTCCTTATTAAGGCT GAATATGTACCTTTTTTTTTTATCGTACAGAATATTTTACTGTATAATGAATTTTCTCTC TTCGAAGTAGCATCCATATTGTCCAGCTACTTTTTTTTCACTTATGAGAAGAACTTGCAG TTGAATTTCCTGCGGCACTTCAACCTCGCTCTGCTCAAGGTGTTGGGCATCTACCCCATG TACGAGGCGTACAAGGAGGAGTACGAGTAG
  • Download Fasta

  • Fasta :-

    MFFLLRLLVSLCVIIVSVRHEHARVILSNKFAASVLNSGTRVGEPSRGTTTLKRDTTRKN GLFRSDQKQNTTSEHGYYYFTKEKNKIIKKKKKKFSLNYSRNPKVVTRGTRKKTHYPLLF ISPSSTSLNEITESVKALFNLDYIENSYLYSYIKSFKRTPPLTKLYLLCTFIFSIFMHAN KNIYKLIVFDFGKIFKEGQVWRLITPYFYIGNLYLQYFLMFNYLHIYMSSVEIAHYKNPE DLLTFFSFGYLSNLLFTIIGSMYNENVLNLQGYVNKLRRLILLGGKKSSISTKANTADVI ISKQQYNHLGYVFSTYILYYWSRINEGTLINCFELFLIKAEYVPFFFIVQNILLYNEFSL FEVASILSSYFFFTYEKNLQLNFLRHFNLALLKVLGIYPMYEAYKEEYE

    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0827800110 TVTRGTRKKT0.99unspPKNH_0827800291 SKSSISTKAN0.996unsp

PK3_1180c      PKH_082580      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India