PKNH_0835300 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_0835300SP0.2579020.6040290.138069CS pos: 20-21. THA-KR. Pr: 0.9742
No Results

  • Fasta :-

    >PKNH_0835300 MVCLFSLLLFTLLRNNRTHAKRNTHRLSTAHFIHFPGGEVPQGKARHNWVGRGSAVVCSG VYSRCTKTRGLSSNSLLRSIEDEEENATLRDEGASDGASYITTDGVARSDPGTKEMKSVK NGNLCMDAAKGVGGFLGGEGRHLEEISPEGKPIHKGRSRMSRRYRRREGIIPRVEDIKDM KKDLKLFFFKKRIIYLTEEINKKTTDEMISQLLYLDNINHDDIKIYINSPGGSINEGLAI LDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGQPQDIE IQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDHYMNALEAKRYGIIDEVIETKLPHP YFDEAVRESSSG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0835300.fa Sequence name : PKNH_0835300 Sequence length : 372 VALUES OF COMPUTED PARAMETERS Coef20 : 4.952 CoefTot : -0.998 ChDiff : 8 ZoneTo : 80 KR : 12 DE : 1 CleavSite : 79 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 1.829 0.343 0.655 MesoH : -0.528 0.362 -0.364 0.260 MuHd_075 : 43.106 24.369 10.270 10.327 MuHd_095 : 36.513 20.081 10.675 8.886 MuHd_100 : 26.902 19.337 9.074 7.127 MuHd_105 : 24.724 16.761 6.973 5.236 Hmax_075 : 5.483 12.700 -1.442 3.197 Hmax_095 : 1.925 16.400 5.816 1.864 Hmax_100 : 4.500 5.500 5.816 2.310 Hmax_105 : -0.175 -3.063 -0.606 5.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0256 0.9744 DFMC : 0.0122 0.9878 This protein is probably imported in mitochondria. f(Ser) = 0.1125 f(Arg) = 0.1125 CMi = 0.49451 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 372 PKNH_0835300 MVCLFSLLLFTLLRNNRTHAKRNTHRLSTAHFIHFPGGEVPQGKARHNWVGRGSAVVCSGVYSRCTKTRGLSSNSLLRSI 80 EDEEENATLRDEGASDGASYITTDGVARSDPGTKEMKSVKNGNLCMDAAKGVGGFLGGEGRHLEEISPEGKPIHKGRSRM 160 SRRYRRREGIIPRVEDIKDMKKDLKLFFFKKRIIYLTEEINKKTTDEMISQLLYLDNINHDDIKIYINSPGGSINEGLAI 240 LDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGQPQDIEIQTKEILYLKKLLYNYLSTF 320 TNQTTETIEKDSDRDHYMNALEAKRYGIIDEVIETKLPHPYFDEAVRESSSG 400 ................................................................................ 80 ................................................................................ 160 .....P.......................................................................... 240 ................................................................................ 320 .................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PKNH_0835300 14 LLFTLLR|NN 0.071 . PKNH_0835300 17 TLLRNNR|TH 0.151 . PKNH_0835300 21 NNRTHAK|RN 0.073 . PKNH_0835300 22 NRTHAKR|NT 0.193 . PKNH_0835300 26 AKRNTHR|LS 0.114 . PKNH_0835300 44 GEVPQGK|AR 0.067 . PKNH_0835300 46 VPQGKAR|HN 0.157 . PKNH_0835300 52 RHNWVGR|GS 0.127 . PKNH_0835300 64 CSGVYSR|CT 0.098 . PKNH_0835300 67 VYSRCTK|TR 0.120 . PKNH_0835300 69 SRCTKTR|GL 0.136 . PKNH_0835300 78 SSNSLLR|SI 0.269 . PKNH_0835300 90 EENATLR|DE 0.123 . PKNH_0835300 108 TTDGVAR|SD 0.123 . PKNH_0835300 114 RSDPGTK|EM 0.058 . PKNH_0835300 117 PGTKEMK|SV 0.102 . PKNH_0835300 120 KEMKSVK|NG 0.062 . PKNH_0835300 130 LCMDAAK|GV 0.123 . PKNH_0835300 141 FLGGEGR|HL 0.101 . PKNH_0835300 151 EISPEGK|PI 0.086 . PKNH_0835300 155 EGKPIHK|GR 0.060 . PKNH_0835300 157 KPIHKGR|SR 0.176 . PKNH_0835300 159 IHKGRSR|MS 0.094 . PKNH_0835300 162 GRSRMSR|RY 0.418 . PKNH_0835300 163 RSRMSRR|YR 0.212 . PKNH_0835300 165 RMSRRYR|RR 0.424 . PKNH_0835300 166 MSRRYRR|RE 0.556 *ProP* PKNH_0835300 167 SRRYRRR|EG 0.162 . PKNH_0835300 173 REGIIPR|VE 0.082 . PKNH_0835300 178 PRVEDIK|DM 0.073 . PKNH_0835300 181 EDIKDMK|KD 0.056 . PKNH_0835300 182 DIKDMKK|DL 0.088 . PKNH_0835300 185 DMKKDLK|LF 0.059 . PKNH_0835300 190 LKLFFFK|KR 0.064 . PKNH_0835300 191 KLFFFKK|RI 0.096 . PKNH_0835300 192 LFFFKKR|II 0.185 . PKNH_0835300 202 LTEEINK|KT 0.063 . PKNH_0835300 203 TEEINKK|TT 0.118 . PKNH_0835300 224 INHDDIK|IY 0.068 . PKNH_0835300 248 DIFNYIK|SD 0.072 . PKNH_0835300 271 VILASGK|KG 0.055 . PKNH_0835300 272 ILASGKK|GK 0.121 . PKNH_0835300 274 ASGKKGK|RK 0.064 . PKNH_0835300 275 SGKKGKR|KS 0.124 . PKNH_0835300 276 GKKGKRK|SL 0.168 . PKNH_0835300 282 KSLPNCR|IM 0.080 . PKNH_0835300 304 DIEIQTK|EI 0.059 . PKNH_0835300 310 KEILYLK|KL 0.052 . PKNH_0835300 311 EILYLKK|LL 0.101 . PKNH_0835300 330 TTETIEK|DS 0.066 . PKNH_0835300 334 IEKDSDR|DH 0.096 . PKNH_0835300 344 MNALEAK|RY 0.085 . PKNH_0835300 345 NALEAKR|YG 0.125 . PKNH_0835300 356 DEVIETK|LP 0.061 . PKNH_0835300 367 YFDEAVR|ES 0.086 . ____________________________^_________________

  • Fasta :-

    >PKNH_0835300 ATGGTATGTTTATTTTCGCTTCTGCTTTTCACCCTACTGAGAAATAACAGAACACATGCA AAAAGGAATACACACAGATTGAGCACGGCCCACTTCATACATTTCCCGGGTGGAGAGGTT CCCCAAGGGAAGGCAAGGCACAACTGGGTAGGCAGGGGCAGCGCTGTTGTTTGCAGTGGT GTGTACAGCCGCTGCACCAAAACCAGGGGTCTGTCGTCCAATTCGCTTCTGCGGTCCATA GAGGATGAAGAGGAAAACGCCACACTGAGGGACGAGGGTGCATCAGATGGTGCATCATAT ATCACGACAGATGGAGTGGCGAGAAGTGACCCTGGTACAAAGGAAATGAAAAGTGTTAAG AATGGCAACTTGTGTATGGATGCTGCCAAGGGTGTGGGTGGTTTCCTCGGAGGAGAGGGA AGGCATTTAGAGGAAATTTCTCCTGAAGGAAAACCAATTCACAAAGGCAGGAGCAGGATG AGCAGAAGGTACAGGAGGAGGGAGGGGATCATTCCCCGAGTGGAAGACATCAAAGATATG AAGAAGGACCTGAAGTTATTTTTTTTCAAAAAAAGAATAATCTACTTGACGGAAGAAATA AATAAAAAAACGACCGATGAGATGATCAGTCAGTTGTTATACTTAGATAACATAAATCAC GACGACATCAAAATTTACATAAATTCCCCAGGAGGGTCCATAAATGAGGGACTAGCCATT TTGGATATTTTCAATTACATCAAGTCAGACATACAGACAATATCTTTTGGCCTAGTAGCA TCTATGGCATCTGTAATTTTAGCTAGCGGGAAAAAGGGGAAGAGGAAATCTCTGCCCAAT TGCAGAATCATGATCCATCAACCTCTGGGAAATGCATTTGGACAGCCCCAGGATATAGAG ATACAGACCAAGGAAATTCTTTATCTGAAGAAACTGTTGTATAATTACTTGTCCACTTTT ACTAACCAGACAACTGAGACCATTGAGAAGGACTCAGACAGAGACCACTACATGAATGCG CTGGAGGCGAAGAGGTATGGAATAATTGATGAGGTGATTGAGACAAAGTTGCCACACCCA TATTTTGATGAAGCCGTGAGGGAGTCTAGCAGTGGTTGA
  • Download Fasta

  • Fasta :-

    MVCLFSLLLFTLLRNNRTHAKRNTHRLSTAHFIHFPGGEVPQGKARHNWVGRGSAVVCSG VYSRCTKTRGLSSNSLLRSIEDEEENATLRDEGASDGASYITTDGVARSDPGTKEMKSVK NGNLCMDAAKGVGGFLGGEGRHLEEISPEGKPIHKGRSRMSRRYRRREGIIPRVEDIKDM KKDLKLFFFKKRIIYLTEEINKKTTDEMISQLLYLDNINHDDIKIYINSPGGSINEGLAI LDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGQPQDIE IQTKEILYLKKLLYNYLSTFTNQTTETIEKDSDRDHYMNALEAKRYGIIDEVIETKLPHP YFDEAVRESSSG

    No Results
  • title: active site residues
  • coordinates: S261,H286,D335
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0835300161 SRSRMSRRYR0.996unspPKNH_0835300161 SRSRMSRRYR0.996unspPKNH_0835300161 SRSRMSRRYR0.996unspPKNH_0835300332 SIEKDSDRDH0.998unspPKNH_083530079 SSLLRSIEDE0.996unspPKNH_0835300118 SKEMKSVKNG0.996unsp

PK3_0500c      PKH_083260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India