PKNH_0911700 | rhomboid protease ROM1, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_0911700OTHER0.9999780.0000010.000021
No Results

  • Fasta :-

    >PKNH_0911700 MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISISIKPADFLTPSDSFLITLGANVASKIKQGEIHRLVLPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNMLSSCVTYCPIKVGASTSGMGLLGVVTSE LILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDNVGHLGGLLSGISMGILYNSQM ENKSSWYDHMKMASYACLALLAIVPPIVLFTVPRTC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0911700.fa Sequence name : PKNH_0911700 Sequence length : 276 VALUES OF COMPUTED PARAMETERS Coef20 : 3.077 CoefTot : 0.002 ChDiff : 6 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.324 2.859 0.509 0.932 MesoH : 0.700 1.132 -0.011 0.460 MuHd_075 : 16.137 7.850 3.758 4.065 MuHd_095 : 18.533 15.247 7.204 2.792 MuHd_100 : 23.358 20.736 8.117 4.508 MuHd_105 : 25.333 20.907 7.612 4.759 Hmax_075 : 1.400 2.100 -3.206 2.193 Hmax_095 : -3.150 5.500 -2.093 1.420 Hmax_100 : 2.400 10.900 0.031 2.840 Hmax_105 : 1.487 10.000 -0.311 2.713 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9936 0.0064 DFMC : 0.9934 0.0066
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 276 PKNH_0911700 MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSIIQIIVFIISISIKPADFLTPS 80 DSFLITLGANVASKIKQGEIHRLVLPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNMLSSCVTYC 160 PIKVGASTSGMGLLGVVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDNVGHLGGLLSGISMGILYNSQM 240 ENKSSWYDHMKMASYACLALLAIVPPIVLFTVPRTC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0911700 11 HTLAEYR|DD 0.085 . PKNH_0911700 22 ENLPFNR|KY 0.100 . PKNH_0911700 23 NLPFNRK|YY 0.073 . PKNH_0911700 34 QSSFIQR|SK 0.141 . PKNH_0911700 36 SFIQRSK|PI 0.072 . PKNH_0911700 51 FPHFTWK|SF 0.098 . PKNH_0911700 72 IISISIK|PA 0.084 . PKNH_0911700 94 GANVASK|IK 0.073 . PKNH_0911700 96 NVASKIK|QG 0.065 . PKNH_0911700 102 KQGEIHR|LV 0.101 . PKNH_0911700 125 NVFFQLR|MG 0.087 . PKNH_0911700 132 MGFTLEK|NY 0.066 . PKNH_0911700 138 KNYGIVK|II 0.062 . PKNH_0911700 163 VTYCPIK|VG 0.053 . PKNH_0911700 189 LLWHVIR|HR 0.102 . PKNH_0911700 191 WHVIRHR|ER 0.068 . PKNH_0911700 193 VIRHRER|VV 0.135 . PKNH_0911700 243 NSQMENK|SS 0.077 . PKNH_0911700 251 SWYDHMK|MA 0.088 . PKNH_0911700 274 VLFTVPR|TC 0.089 . ____________________________^_________________

  • Fasta :-

    >PKNH_0911700 ATGAGCAATATTCATACCCTAGCGGAGTACAGGGACGACTATGGGGAAAACCTCCCCTTC AATAGAAAGTACTATCAGTCCCAGAGTAGCTTCATACAAAGATCGAAACCCATTGATGTA GTAAACCTTATATTTCCGCACTTTACTTGGAAGAGCTTTATCATGGCTGTGTCCATCATA CAAATAATTGTTTTTATAATATCAATTAGTATAAAACCTGCCGATTTTTTGACTCCCTCT GATTCTTTCCTCATAACGCTAGGAGCGAATGTGGCTTCCAAGATAAAGCAAGGCGAAATT CACAGATTGGTTCTTCCCATATTCTTGCATGCGAATATATTTCACACATTTTTTAATGTA TTTTTCCAGTTAAGAATGGGGTTTACATTGGAGAAAAATTACGGCATTGTGAAGATCATC ATTCTTTATTTCTTGACAGGCATATATGGTAACATGTTATCCTCATGTGTTACTTATTGC CCTATCAAAGTTGGCGCGAGCACCTCCGGTATGGGATTACTGGGCGTTGTAACATCTGAA TTAATATTACTGTGGCATGTTATTAGACATAGAGAGAGAGTCGTTTTTAATATTATCTTT TTTTCTTTAATTTCTTTTTTTTATTATTTTACATTTAACGGGTCAAATATTGATAATGTT GGTCATTTGGGAGGATTGCTCTCAGGCATCTCCATGGGCATACTCTACAACAGCCAAATG GAAAACAAATCTTCCTGGTATGACCACATGAAGATGGCTTCCTATGCTTGCTTGGCTCTA TTAGCCATCGTTCCTCCGATTGTTTTGTTTACCGTACCACGCACTTGCTAA
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  • Fasta :-

    MSNIHTLAEYRDDYGENLPFNRKYYQSQSSFIQRSKPIDVVNLIFPHFTWKSFIMAVSII QIIVFIISISIKPADFLTPSDSFLITLGANVASKIKQGEIHRLVLPIFLHANIFHTFFNV FFQLRMGFTLEKNYGIVKIIILYFLTGIYGNMLSSCVTYCPIKVGASTSGMGLLGVVTSE LILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDNVGHLGGLLSGISMGILYNSQM ENKSSWYDHMKMASYACLALLAIVPPIVLFTVPRTC

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PKNH_0911700245 SENKSSWYDH0.996unsp

PK11_1100w      PKH_091130      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India