PKNH_0913300 | rhomboid protease ROM9, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_0913300OTHER0.8916230.0005370.107840
No Results

  • Fasta :-

    >PKNH_0913300 MKKVEKHLAQCGHAARGFSRYSHKQPIQEKRKRPSLFGTMRGIHFRDMFPKWNTITMEYA RKKEKNVEKMVKRTFEELRIKYEEVRMKYQDTLSIWKDEKTKIRKRVVPYFLKGMFMRNV ASDGRYVKTVLHKISFEGKLFLQNLKHVCRSANIPYYRNVIHHHYRKAPVTYTLMSLHLL VFLLWMSAKPGDSYNYVSMPGGFYYPSSNVYSPFGVNNASSRSSSSFGLFNFLTTEFMYN HFCCGAQQLRERKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIINSRNFFLTYFIS GMISSYIQICYHKNGRSSSYGNVYVLGASGSISSILTTYTLMFPKNNIYLYGVLALPLAL FTSLYCANEVYCVLTDKKDNTGHMAHLTGMFLGMLYYYFYVKGRVVM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_0913300.fa Sequence name : PKNH_0913300 Sequence length : 407 VALUES OF COMPUTED PARAMETERS Coef20 : 3.754 CoefTot : -2.415 ChDiff : 33 ZoneTo : 46 KR : 12 DE : 2 CleavSite : 33 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.982 1.871 0.351 0.731 MesoH : 0.549 0.629 -0.069 0.361 MuHd_075 : 40.719 21.014 9.733 9.239 MuHd_095 : 41.886 21.161 12.276 8.427 MuHd_100 : 42.967 27.865 13.304 9.063 MuHd_105 : 49.512 31.430 15.563 11.152 Hmax_075 : 2.217 13.067 -2.054 4.947 Hmax_095 : 9.900 5.700 2.078 0.945 Hmax_100 : 14.300 16.600 4.140 4.610 Hmax_105 : 16.683 19.717 4.796 5.752 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1584 0.8416 DFMC : 0.2353 0.7647 This protein is probably imported in mitochondria. f(Ser) = 0.0652 f(Arg) = 0.1304 CMi = 0.25818 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 407 PKNH_0913300 MKKVEKHLAQCGHAARGFSRYSHKQPIQEKRKRPSLFGTMRGIHFRDMFPKWNTITMEYARKKEKNVEKMVKRTFEELRI 80 KYEEVRMKYQDTLSIWKDEKTKIRKRVVPYFLKGMFMRNVASDGRYVKTVLHKISFEGKLFLQNLKHVCRSANIPYYRNV 160 IHHHYRKAPVTYTLMSLHLLVFLLWMSAKPGDSYNYVSMPGGFYYPSSNVYSPFGVNNASSRSSSSFGLFNFLTTEFMYN 240 HFCCGAQQLRERKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIINSRNFFLTYFISGMISSYIQICYHKNGRSSSY 320 GNVYVLGASGSISSILTTYTLMFPKNNIYLYGVLALPLALFTSLYCANEVYCVLTDKKDNTGHMAHLTGMFLGMLYYYFY 400 VKGRVVM 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_0913300 2 -----MK|KV 0.104 . PKNH_0913300 3 ----MKK|VE 0.076 . PKNH_0913300 6 -MKKVEK|HL 0.076 . PKNH_0913300 16 QCGHAAR|GF 0.106 . PKNH_0913300 20 AARGFSR|YS 0.162 . PKNH_0913300 24 FSRYSHK|QP 0.074 . PKNH_0913300 30 KQPIQEK|RK 0.067 . PKNH_0913300 31 QPIQEKR|KR 0.177 . PKNH_0913300 32 PIQEKRK|RP 0.079 . PKNH_0913300 33 IQEKRKR|PS 0.178 . PKNH_0913300 41 SLFGTMR|GI 0.099 . PKNH_0913300 46 MRGIHFR|DM 0.211 . PKNH_0913300 51 FRDMFPK|WN 0.078 . PKNH_0913300 61 ITMEYAR|KK 0.103 . PKNH_0913300 62 TMEYARK|KE 0.089 . PKNH_0913300 63 MEYARKK|EK 0.102 . PKNH_0913300 65 YARKKEK|NV 0.099 . PKNH_0913300 69 KEKNVEK|MV 0.086 . PKNH_0913300 72 NVEKMVK|RT 0.069 . PKNH_0913300 73 VEKMVKR|TF 0.170 . PKNH_0913300 79 RTFEELR|IK 0.094 . PKNH_0913300 81 FEELRIK|YE 0.062 . PKNH_0913300 86 IKYEEVR|MK 0.089 . PKNH_0913300 88 YEEVRMK|YQ 0.069 . PKNH_0913300 97 DTLSIWK|DE 0.057 . PKNH_0913300 100 SIWKDEK|TK 0.061 . PKNH_0913300 102 WKDEKTK|IR 0.065 . PKNH_0913300 104 DEKTKIR|KR 0.069 . PKNH_0913300 105 EKTKIRK|RV 0.087 . PKNH_0913300 106 KTKIRKR|VV 0.220 . PKNH_0913300 113 VVPYFLK|GM 0.057 . PKNH_0913300 118 LKGMFMR|NV 0.143 . PKNH_0913300 125 NVASDGR|YV 0.146 . PKNH_0913300 128 SDGRYVK|TV 0.184 . PKNH_0913300 133 VKTVLHK|IS 0.064 . PKNH_0913300 139 KISFEGK|LF 0.079 . PKNH_0913300 146 LFLQNLK|HV 0.065 . PKNH_0913300 150 NLKHVCR|SA 0.135 . PKNH_0913300 158 ANIPYYR|NV 0.115 . PKNH_0913300 166 VIHHHYR|KA 0.114 . PKNH_0913300 167 IHHHYRK|AP 0.088 . PKNH_0913300 189 LLWMSAK|PG 0.069 . PKNH_0913300 222 VNNASSR|SS 0.156 . PKNH_0913300 250 CGAQQLR|ER 0.065 . PKNH_0913300 252 AQQLRER|KL 0.091 . PKNH_0913300 253 QQLRERK|LY 0.139 . PKNH_0913300 282 SLFYIGR|SF 0.155 . PKNH_0913300 291 EMIINSR|NF 0.068 . PKNH_0913300 313 IQICYHK|NG 0.057 . PKNH_0913300 316 CYHKNGR|SS 0.175 . PKNH_0913300 345 YTLMFPK|NN 0.058 . PKNH_0913300 377 YCVLTDK|KD 0.062 . PKNH_0913300 378 CVLTDKK|DN 0.100 . PKNH_0913300 402 YYYFYVK|GR 0.056 . PKNH_0913300 404 YFYVKGR|VV 0.132 . ____________________________^_________________

  • Fasta :-

    >PKNH_0913300 ATGAAAAAGGTGGAGAAGCACTTGGCCCAGTGCGGCCATGCGGCTCGGGGCTTCTCCAGA TATTCCCATAAGCAACCCATTCAGGAGAAAAGAAAGAGACCATCCCTTTTTGGCACTATG CGGGGTATTCACTTTCGTGATATGTTCCCCAAATGGAACACTATAACGATGGAATATGCT CGAAAGAAAGAAAAGAACGTAGAGAAAATGGTAAAAAGAACTTTTGAAGAATTGCGTATC AAGTATGAGGAGGTAAGAATGAAATATCAGGACACCTTATCCATTTGGAAAGACGAAAAA ACGAAAATTAGAAAAAGAGTTGTCCCATACTTCTTGAAGGGGATGTTCATGAGAAATGTA GCTTCTGATGGACGATACGTAAAAACTGTCCTACATAAAATTTCCTTTGAAGGAAAATTA TTCTTACAAAACTTGAAGCATGTCTGTCGAAGCGCAAATATACCATATTACAGAAATGTC ATTCATCACCACTATAGGAAAGCACCTGTGACGTACACATTGATGTCATTGCACCTTTTG GTTTTTCTTCTTTGGATGAGTGCAAAACCTGGGGATTCTTACAACTATGTTTCGATGCCC GGAGGTTTTTACTATCCCAGTTCAAATGTCTATTCCCCCTTCGGGGTTAACAATGCGTCG TCCCGTTCTTCTTCCTCCTTTGGGTTGTTCAACTTCCTAACCACTGAATTTATGTATAAC CACTTCTGTTGTGGAGCCCAACAGCTCAGGGAGAGGAAATTATACACACTCATAACCAAC CTCATCAGTCACAACACTGTGCAGTCTCTTCTACTGAACACCATTTCATTGTTCTACATT GGGAGGTCTTTCGAGATGATTATTAATTCGAGGAATTTCTTTCTAACATATTTTATCAGT GGGATGATATCATCGTATATACAGATTTGTTACCATAAAAATGGGCGCTCCTCTTCCTAT GGGAATGTTTATGTCCTGGGGGCCAGCGGTAGCATCAGCTCCATCCTTACGACGTACACC CTCATGTTTCCCAAGAACAATATTTACCTTTATGGGGTTCTAGCACTTCCCCTGGCCCTA TTCACGTCCCTGTACTGTGCAAACGAGGTCTACTGCGTACTGACGGACAAGAAGGACAAC ACAGGTCATATGGCACACCTCACGGGGATGTTCCTGGGAATGCTTTACTATTATTTTTAC GTTAAGGGGAGAGTAGTCATGTAA
  • Download Fasta

  • Fasta :-

    MKKVEKHLAQCGHAARGFSRYSHKQPIQEKRKRPSLFGTMRGIHFRDMFPKWNTITMEYA RKKEKNVEKMVKRTFEELRIKYEEVRMKYQDTLSIWKDEKTKIRKRVVPYFLKGMFMRNV ASDGRYVKTVLHKISFEGKLFLQNLKHVCRSANIPYYRNVIHHHYRKAPVTYTLMSLHLL VFLLWMSAKPGDSYNYVSMPGGFYYPSSNVYSPFGVNNASSRSSSSFGLFNFLTTEFMYN HFCCGAQQLRERKLYTLITNLISHNTVQSLLLNTISLFYIGRSFEMIINSRNFFLTYFIS GMISSYIQICYHKNGRSSSYGNVYVLGASGSISSILTTYTLMFPKNNIYLYGVLALPLAL FTSLYCANEVYCVLTDKKDNTGHMAHLTGMFLGMLYYYFYVKGRVVM

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_0913300224 SSSRSSSSFG0.995unspPKNH_0913300224 SSSRSSSSFG0.995unspPKNH_0913300224 SSSRSSSSFG0.995unspPKNH_0913300318 SNGRSSSYGN0.997unspPKNH_091330022 SFSRYSHKQP0.995unspPKNH_091330035 SRKRPSLFGT0.992unsp

PK11_1250c      PKH_091290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India