PKNH_1014900 | proteasome subunit beta type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1014900OTHER0.9999300.0000520.000018
No Results

  • Fasta :-

    >PKNH_1014900 MEILPLSDYSGEKKPEEREGPVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRYCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHGHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNDNKGVLYNYDAIGSYCEATHSCVGSGAALIFPILDN RMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDQTEIYIIDQMGVKTTTLDLKQ D
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1014900.fa Sequence name : PKNH_1014900 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 2.551 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.535 1.388 0.253 0.572 MesoH : -0.272 0.503 -0.223 0.284 MuHd_075 : 37.354 9.727 8.439 5.106 MuHd_095 : 17.499 9.515 6.307 2.929 MuHd_100 : 11.383 7.601 4.274 0.889 MuHd_105 : 11.127 9.283 3.014 1.570 Hmax_075 : 8.633 1.517 -0.119 2.660 Hmax_095 : -10.100 -1.500 -3.561 1.280 Hmax_100 : -10.600 -2.100 -4.229 0.820 Hmax_105 : -8.900 -0.817 -3.922 0.380 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9815 0.0185 DFMC : 0.9644 0.0356
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PKNH_1014900 MEILPLSDYSGEKKPEEREGPVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSLSYSIYTRYCPKISKLTDKCI 80 IGSSGMQSDIKTLHSLLKKKIELFVLEHGHYPDIHVIARLLCVILYSRRFFPYYTFNLLAGVSNDNKGVLYNYDAIGSYC 160 EATHSCVGSGAALIFPILDNRMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDQTEIYIIDQMGVKTTTLDLKQ 240 D 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1014900 13 SDYSGEK|KP 0.063 . PKNH_1014900 14 DYSGEKK|PE 0.115 . PKNH_1014900 18 EKKPEER|EG 0.073 . PKNH_1014900 26 GPVEHGR|GF 0.109 . PKNH_1014900 29 EHGRGFK|RW 0.123 . PKNH_1014900 30 HGRGFKR|WN 0.193 . PKNH_1014900 47 VIGVTGK|DY 0.067 . PKNH_1014900 57 ILAADTR|LS 0.066 . PKNH_1014900 67 SYSIYTR|YC 0.094 . PKNH_1014900 71 YTRYCPK|IS 0.059 . PKNH_1014900 74 YCPKISK|LT 0.062 . PKNH_1014900 78 ISKLTDK|CI 0.077 . PKNH_1014900 91 GMQSDIK|TL 0.065 . PKNH_1014900 98 TLHSLLK|KK 0.065 . PKNH_1014900 99 LHSLLKK|KI 0.100 . PKNH_1014900 100 HSLLKKK|IE 0.097 . PKNH_1014900 119 DIHVIAR|LL 0.113 . PKNH_1014900 128 CVILYSR|RF 0.064 . PKNH_1014900 129 VILYSRR|FF 0.106 . PKNH_1014900 147 GVSNDNK|GV 0.078 . PKNH_1014900 181 FPILDNR|ME 0.075 . PKNH_1014900 185 DNRMEQK|NQ 0.062 . PKNH_1014900 190 QKNQLIK|NL 0.067 . PKNH_1014900 197 NLNFNLR|DD 0.118 . PKNH_1014900 204 DDIDFVK|DA 0.080 . PKNH_1014900 213 ITSATER|DI 0.178 . PKNH_1014900 232 IDQMGVK|TT 0.061 . PKNH_1014900 239 TTTLDLK|QD 0.062 . ____________________________^_________________

  • Fasta :-

    >PKNH_1014900 ATGGAAATTCTGCCTCTAAGTGATTACTCAGGGGAGAAGAAGCCAGAGGAGAGGGAAGGC CCAGTGGAACATGGCCGCGGATTCAAGCGCTGGAACCCTTACGTGGACAATGGAGGAACC GTTATCGGAGTGACCGGCAAGGACTACGTTATCTTGGCCGCAGACACGAGACTCTCTCTG TCCTACTCAATTTATACGAGATACTGTCCCAAAATATCAAAACTAACGGATAAGTGCATT ATCGGCTCCTCCGGAATGCAATCCGACATCAAGACGTTACATTCCTTGTTGAAGAAAAAA ATTGAGCTCTTCGTGCTGGAGCATGGGCACTACCCGGATATCCACGTGATAGCGAGGCTC CTCTGCGTGATTCTGTACAGTAGAAGATTCTTCCCCTACTATACGTTTAACCTGTTGGCG GGAGTAAGTAACGACAACAAAGGAGTTCTTTACAATTACGATGCGATTGGATCCTACTGC GAAGCAACACACTCCTGCGTTGGTAGTGGAGCAGCACTGATCTTTCCAATATTAGACAAC CGAATGGAACAGAAGAATCAGTTAATCAAGAACTTAAACTTCAACTTGAGGGATGATATT GATTTTGTTAAAGACGCCATTACATCAGCCACGGAGAGAGATATATACACTGGAGACCAA ACAGAGATATATATTATCGACCAGATGGGTGTCAAAACCACCACGCTTGATTTGAAGCAG GATTAG
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  • Fasta :-

    MEILPLSDYSGEKKPEEREGPVEHGRGFKRWNPYVDNGGTVIGVTGKDYVILAADTRLSL SYSIYTRYCPKISKLTDKCIIGSSGMQSDIKTLHSLLKKKIELFVLEHGHYPDIHVIARL LCVILYSRRFFPYYTFNLLAGVSNDNKGVLYNYDAIGSYCEATHSCVGSGAALIFPILDN RMEQKNQLIKNLNFNLRDDIDFVKDAITSATERDIYTGDQTEIYIIDQMGVKTTTLDLKQ D

  • title: active site
  • coordinates: G39,D55,R57,K71,S169,D214,T217,G218
No Results
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No Results

PK5_1770c      PKH_101440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India