PKNH_1117800 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1117800OTHER0.9999390.0000270.000034
No Results

  • Fasta :-

    >PKNH_1117800 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELRFIDEQQINALVEVIDNERTKKNSQN E
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1117800.fa Sequence name : PKNH_1117800 Sequence length : 241 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 1 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.906 1.553 0.127 0.476 MesoH : -1.156 0.057 -0.555 0.114 MuHd_075 : 28.573 14.937 6.543 4.663 MuHd_095 : 12.129 9.750 3.119 2.812 MuHd_100 : 14.109 14.515 5.303 4.707 MuHd_105 : 15.524 17.553 6.307 6.098 Hmax_075 : 12.862 11.025 1.795 4.043 Hmax_095 : 7.000 6.037 0.113 3.526 Hmax_100 : 7.400 12.100 0.248 4.210 Hmax_105 : 3.600 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9775 0.0225 DFMC : 0.9719 0.0281
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 241 PKNH_1117800 MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTEKLIKLDEHNCLAFAGLNADA 80 RVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTHRGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQA 160 IGKNAKVVQEFLEKNYQENMEQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELRFIDEQQINALVEVIDNERTKKNSQN 240 E 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 . 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1117800 5 --MSYDR|AI 0.082 . PKNH_1117800 27 HALEAVK|KG 0.060 . PKNH_1117800 28 ALEAVKK|GG 0.115 . PKNH_1117800 36 GCAVAIK|SS 0.079 . PKNH_1117800 47 AVLAVEK|KN 0.062 . PKNH_1117800 48 VLAVEKK|NI 0.105 . PKNH_1117800 52 EKKNIPK|LQ 0.060 . PKNH_1117800 57 PKLQNPR|TT 0.088 . PKNH_1117800 61 NPRTTEK|LI 0.067 . PKNH_1117800 64 TTEKLIK|LD 0.065 . PKNH_1117800 81 GLNADAR|VL 0.093 . PKNH_1117800 86 ARVLVNK|TR 0.065 . PKNH_1117800 88 VLVNKTR|LE 0.080 . PKNH_1117800 93 TRLECQR|YF 0.088 . PKNH_1117800 109 PVDYIAK|YV 0.089 . PKNH_1117800 113 IAKYVAK|VQ 0.067 . PKNH_1117800 117 VAKVQQK|FT 0.090 . PKNH_1117800 121 QQKFTHR|GG 0.077 . PKNH_1117800 125 THRGGVR|PF 0.107 . PKNH_1117800 137 TLIAGFK|NN 0.059 . PKNH_1117800 140 AGFKNNK|EI 0.065 . PKNH_1117800 157 GIYASWK|AQ 0.074 . PKNH_1117800 163 KAQAIGK|NA 0.074 . PKNH_1117800 166 AIGKNAK|VV 0.077 . PKNH_1117800 174 VQEFLEK|NY 0.059 . PKNH_1117800 191 CLLLAMK|AI 0.068 . PKNH_1117800 202 VVELSSK|NI 0.067 . PKNH_1117800 212 VALLTEK|EL 0.057 . PKNH_1117800 215 LTEKELR|FI 0.129 . PKNH_1117800 233 EVIDNER|TK 0.067 . PKNH_1117800 235 IDNERTK|KN 0.085 . PKNH_1117800 236 DNERTKK|NS 0.236 . ____________________________^_________________

  • Fasta :-

    >PKNH_1117800 ATGAGTTATGATAGAGCCATAACCGTGTTCAGTCCTGATGGACATCTGCTACAAGTAGAA CATGCCTTGGAGGCTGTTAAGAAAGGAGGCTGTGCAGTGGCAATAAAAAGTTCCAATTTC GCTGTTTTGGCAGTGGAAAAGAAGAACATTCCCAAATTGCAAAATCCAAGAACAACCGAG AAGTTGATCAAATTGGACGAACACAATTGTTTAGCCTTTGCGGGATTGAATGCCGATGCG AGAGTTTTAGTCAATAAGACACGACTGGAATGCCAAAGGTACTTTTTAAACATGGACGAA CCGGCGCCAGTTGACTACATTGCCAAGTACGTTGCGAAGGTACAGCAAAAGTTTACACAT AGAGGAGGTGTGAGACCATTTGGAATAGCAACGTTAATCGCTGGATTTAAGAATAACAAA GAAATATGCATTTACCAAACAGAGCCCAGCGGTATTTATGCATCGTGGAAAGCGCAGGCA ATTGGAAAAAACGCAAAAGTTGTGCAGGAATTTCTGGAAAAAAATTACCAAGAAAATATG GAACAGAACGATTGCCTCCTCCTAGCCATGAAGGCCATATTTGAGGTCGTTGAATTGAGC AGCAAAAATATAGAAGTCGCCCTGCTGACGGAGAAGGAGTTAAGATTCATCGATGAACAG CAAATAAACGCACTGGTTGAAGTAATCGACAACGAGCGAACGAAGAAGAATTCACAGAAT GAATAA
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  • Fasta :-

    MSYDRAITVFSPDGHLLQVEHALEAVKKGGCAVAIKSSNFAVLAVEKKNIPKLQNPRTTE KLIKLDEHNCLAFAGLNADARVLVNKTRLECQRYFLNMDEPAPVDYIAKYVAKVQQKFTH RGGVRPFGIATLIAGFKNNKEICIYQTEPSGIYASWKAQAIGKNAKVVQEFLEKNYQENM EQNDCLLLAMKAIFEVVELSSKNIEVALLTEKELRFIDEQQINALVEVIDNERTKKNSQN E

    No Results
  • title: active site
  • coordinates: G30,E46,K48,K61,K163
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PK13_5370w      PKH_111720      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India