PKNH_1117900 | proteasome subunit alpha type-4, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1117900OTHER0.9996730.0001050.000223
No Results

  • Fasta :-

    >PKNH_1117900 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITSEGVILGADKVFISKLIDKAN NFEKIYKIDKHIFCGVAGLNADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKVYT EKYVKE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1117900.fa Sequence name : PKNH_1117900 Sequence length : 246 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.254 ChDiff : -1 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.324 1.553 0.257 0.628 MesoH : -0.516 0.436 -0.379 0.251 MuHd_075 : 23.056 5.387 3.615 6.134 MuHd_095 : 14.841 4.720 3.134 2.857 MuHd_100 : 18.488 8.050 3.829 4.676 MuHd_105 : 19.679 11.334 4.048 6.197 Hmax_075 : -3.850 -2.975 -3.651 0.210 Hmax_095 : -1.312 -1.050 -2.054 0.411 Hmax_100 : 10.800 3.300 0.402 2.970 Hmax_105 : -1.283 -0.933 -1.926 2.065 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7051 0.2949 DFMC : 0.6729 0.3271
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 246 PKNH_1117900 MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITSEGVILGADKVFISKLIDKANNFEKIYKIDKHIFCGVAGLN 80 ADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQSYTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWF 160 ATAIGTNNLTASSILKQEWKKDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKVYT 240 EKYVKE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1117900 3 ----MAR|RY 0.096 . PKNH_1117900 4 ---MARR|YD 0.146 . PKNH_1117900 8 ARRYDSR|TT 0.106 . PKNH_1117900 17 TFSPEGR|LY 0.096 . PKNH_1117900 49 VILGADK|VF 0.056 . PKNH_1117900 54 DKVFISK|LI 0.067 . PKNH_1117900 58 ISKLIDK|AN 0.060 . PKNH_1117900 64 KANNFEK|IY 0.072 . PKNH_1117900 67 NFEKIYK|ID 0.066 . PKNH_1117900 70 KIYKIDK|HI 0.071 . PKNH_1117900 91 ILINQSR|LY 0.083 . PKNH_1117900 96 SRLYTQR|YL 0.109 . PKNH_1117900 118 VQICDIK|QS 0.063 . PKNH_1117900 128 TQYGGLR|PY 0.103 . PKNH_1117900 142 IAGYDVK|EG 0.063 . PKNH_1117900 176 TASSILK|QE 0.076 . PKNH_1117900 180 ILKQEWK|KD 0.066 . PKNH_1117900 181 LKQEWKK|DM 0.119 . PKNH_1117900 194 GLLLALK|TL 0.059 . PKNH_1117900 198 ALKTLAK|ST 0.088 . PKNH_1117900 206 TDSEVPK|SE 0.110 . PKNH_1117900 209 EVPKSEK|IE 0.056 . PKNH_1117900 218 LAYLSNK|DG 0.073 . PKNH_1117900 225 DGELIQK|YL 0.068 . PKNH_1117900 230 QKYLTEK|EI 0.062 . PKNH_1117900 237 EIAELVK|VY 0.060 . PKNH_1117900 242 VKVYTEK|YV 0.089 . PKNH_1117900 245 YTEKYVK|E- 0.057 . ____________________________^_________________

  • Fasta :-

    >PKNH_1117900 ATGGCCAGAAGATATGACAGCAGGACGACGACCTTCTCCCCAGAGGGTAGATTATACCAA GTAGAATATGCCCTAGAGGCAATAAATAATGCGAGCATAACAATTGGCATAATAACAAGC GAAGGAGTAATTCTGGGTGCGGACAAAGTGTTCATATCCAAATTAATAGATAAGGCAAAT AATTTCGAAAAAATCTACAAAATTGACAAGCATATATTTTGTGGAGTAGCAGGATTAAAT GCCGATGCGAACATCTTAATAAACCAGTCAAGACTCTACACACAAAGATATTTGTACAAC TACAATGATGTGCAGCCTGTGTCTCAATTAGTTGTTCAGATTTGTGATATTAAGCAGAGT TATACACAGTATGGTGGGTTAAGACCCTATGGTGTTAGTTTTCTAATTGCAGGGTATGAT GTAAAAGAGGGATACCAACTGTATCACACCGACCCAAGTGGGAACTATTCTGGATGGTTT GCTACAGCCATTGGCACTAATAACTTGACGGCAAGTTCCATTCTCAAGCAGGAGTGGAAG AAGGACATGACTCTGCAGGATGGCCTATTGTTGGCCTTGAAAACGCTGGCCAAGAGCACA GATAGCGAGGTACCCAAGAGCGAAAAAATCGAGTTAGCTTACCTATCAAATAAGGATGGC GAATTGATACAGAAATATTTAACAGAAAAGGAAATAGCAGAATTGGTTAAAGTATACACA GAAAAGTATGTGAAAGAGTAA
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  • Fasta :-

    MARRYDSRTTTFSPEGRLYQVEYALEAINNASITIGIITSEGVILGADKVFISKLIDKAN NFEKIYKIDKHIFCGVAGLNADANILINQSRLYTQRYLYNYNDVQPVSQLVVQICDIKQS YTQYGGLRPYGVSFLIAGYDVKEGYQLYHTDPSGNYSGWFATAIGTNNLTASSILKQEWK KDMTLQDGLLLALKTLAKSTDSEVPKSEKIELAYLSNKDGELIQKYLTEKEIAELVKVYT EKYVKE

  • title: active site
  • coordinates: S32,D48,V50,K64,T166
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1117900207 SEVPKSEKIE0.991unspPKNH_1117900207 SEVPKSEKIE0.991unspPKNH_1117900207 SEVPKSEKIE0.991unspPKNH_1117900216 SLAYLSNKDG0.996unspPKNH_11179007 SRRYDSRTTT0.992unspPKNH_111790013 STTTFSPEGR0.99unsp

PK13_5360c      PKH_111730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India