PKNH_1122300 | protein DJ-1, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1122300OTHER0.9992750.0006820.000043
No Results

  • Fasta :-

    >PKNH_1122300 MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVIIADTLID KVKDNIFDVIIIPGGMKGSNAISNCPTVITMLKAQKNSNRFYAAICAAPETVLHRHSLID DVEAVAYPSFETDFKHIGKGRVCVSKNCITSVGPGSAVEFALKIVEILLSRDAALNLASG FLLHPSVTF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1122300.fa Sequence name : PKNH_1122300 Sequence length : 189 VALUES OF COMPUTED PARAMETERS Coef20 : 3.640 CoefTot : 0.014 ChDiff : -1 ZoneTo : 15 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.259 1.294 0.128 0.516 MesoH : -0.556 0.482 -0.328 0.224 MuHd_075 : 1.430 2.185 0.891 1.142 MuHd_095 : 21.675 10.989 7.287 4.121 MuHd_100 : 12.964 10.772 4.618 3.337 MuHd_105 : 5.930 9.719 1.071 2.054 Hmax_075 : 1.867 8.283 -0.384 2.840 Hmax_095 : 12.000 12.800 2.631 4.700 Hmax_100 : 4.800 11.200 0.447 3.980 Hmax_105 : 5.200 11.600 -0.368 3.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9769 0.0231 DFMC : 0.9550 0.0450
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 189 PKNH_1122300 MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVIIADTLIDKVKDNIFDVIIIPGGMKGSN 80 AISNCPTVITMLKAQKNSNRFYAAICAAPETVLHRHSLIDDVEAVAYPSFETDFKHIGKGRVCVSKNCITSVGPGSAVEF 160 ALKIVEILLSRDAALNLASGFLLHPSVTF 240 ................................................................................ 80 ................................................................................ 160 ............................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1122300 4 ---MSGK|KT 0.064 . PKNH_1122300 5 --MSGKK|TA 0.092 . PKNH_1122300 28 TTVDVLR|RA 0.101 . PKNH_1122300 29 TVDVLRR|AN 0.143 . PKNH_1122300 44 SVEETEK|VC 0.056 . PKNH_1122300 50 KVCLQSK|NV 0.071 . PKNH_1122300 61 ADTLIDK|VK 0.059 . PKNH_1122300 63 TLIDKVK|DN 0.075 . PKNH_1122300 77 IIPGGMK|GS 0.060 . PKNH_1122300 93 TVITMLK|AQ 0.058 . PKNH_1122300 96 TMLKAQK|NS 0.058 . PKNH_1122300 100 AQKNSNR|FY 0.120 . PKNH_1122300 115 PETVLHR|HS 0.071 . PKNH_1122300 135 SFETDFK|HI 0.088 . PKNH_1122300 139 DFKHIGK|GR 0.058 . PKNH_1122300 141 KHIGKGR|VC 0.082 . PKNH_1122300 146 GRVCVSK|NC 0.074 . PKNH_1122300 163 AVEFALK|IV 0.071 . PKNH_1122300 171 VEILLSR|DA 0.086 . ____________________________^_________________

  • Fasta :-

    >PKNH_1122300 ATGAGCGGAAAAAAAACAGCCTTAGTTGTAGTGGCATCAGGATCGGAAGATGTGGAATAT ATTACAACGGTCGATGTGCTAAGGAGAGCTAACATCAGCGTGACAACAGCATCCGTAGAG GAAACAGAAAAGGTGTGCTTGCAGTCGAAAAATGTTATCATTGCGGACACCTTAATTGAC AAGGTGAAGGATAACATCTTTGATGTTATCATTATTCCAGGAGGCATGAAAGGATCGAAC GCAATATCGAATTGTCCAACTGTTATTACAATGCTGAAGGCACAGAAAAATAGCAACAGA TTTTATGCGGCCATATGTGCAGCACCTGAAACTGTCCTACATCGCCATTCCCTAATTGAT GACGTTGAGGCAGTAGCATACCCATCGTTCGAAACTGATTTCAAGCATATCGGCAAGGGA AGAGTTTGCGTATCAAAGAACTGTATAACCTCCGTGGGCCCAGGATCTGCTGTCGAATTT GCCCTTAAGATTGTGGAAATATTGTTAAGCAGAGATGCAGCTCTTAACCTTGCTAGCGGT TTTTTACTTCACCCATCTGTGACATTTTAA
  • Download Fasta

  • Fasta :-

    MSGKKTALVVVASGSEDVEYITTVDVLRRANISVTTASVEETEKVCLQSKNVIIADTLID KVKDNIFDVIIIPGGMKGSNAISNCPTVITMLKAQKNSNRFYAAICAAPETVLHRHSLID DVEAVAYPSFETDFKHIGKGRVCVSKNCITSVGPGSAVEFALKIVEILLSRDAALNLASG FLLHPSVTF

  • title: conserved cys residue
  • coordinates: C106
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_112230038 SVTTASVEET0.997unspPKNH_1122300117 SLHRHSLIDD0.997unsp

PK6_2500c      PKH_112180      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India