PKNH_1131800 | rhomboid protease ROM10, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_1131800OTHER0.9998960.0000030.000101
No Results

  • Fasta :-

    >PKNH_1131800 MNFFSNASNNSKFSKSKDGSLLTCKYTMSFNKTFKKDIAFIQILFPSLTVKSITTSFFLL LYFAFFILNVCNFDRGAPLYLSEPVLKQYGMSRNSVTNNHQYYKLLTATFLHSNVWNLII NAYYLMNIGIIVEKSYGKTHYMGIMILSALCGNLLLCATSNCGSVYMGISTILSGFMGLF LQEIVENYKKLTDRWSIIGNYVFALLSLYLTISMFSFNGNILGNLGGIFGGFCYPYLTKK DTFHGQEKKVRLTLAVLLTLLLSSTLISLIVAKC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1131800.fa Sequence name : PKNH_1131800 Sequence length : 274 VALUES OF COMPUTED PARAMETERS Coef20 : 3.864 CoefTot : -0.771 ChDiff : 13 ZoneTo : 73 KR : 8 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.376 2.471 0.452 0.806 MesoH : 0.842 1.000 0.006 0.457 MuHd_075 : 35.767 25.564 10.817 7.499 MuHd_095 : 28.363 15.068 7.558 7.113 MuHd_100 : 31.348 19.469 9.466 7.382 MuHd_105 : 37.788 20.921 10.733 7.261 Hmax_075 : 18.783 24.733 4.343 6.970 Hmax_095 : 8.925 6.738 -0.081 3.745 Hmax_100 : 12.900 18.700 0.024 4.510 Hmax_105 : 14.467 25.900 2.771 4.725 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8988 0.1012 DFMC : 0.5586 0.4414
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 274 PKNH_1131800 MNFFSNASNNSKFSKSKDGSLLTCKYTMSFNKTFKKDIAFIQILFPSLTVKSITTSFFLLLYFAFFILNVCNFDRGAPLY 80 LSEPVLKQYGMSRNSVTNNHQYYKLLTATFLHSNVWNLIINAYYLMNIGIIVEKSYGKTHYMGIMILSALCGNLLLCATS 160 NCGSVYMGISTILSGFMGLFLQEIVENYKKLTDRWSIIGNYVFALLSLYLTISMFSFNGNILGNLGGIFGGFCYPYLTKK 240 DTFHGQEKKVRLTLAVLLTLLLSSTLISLIVAKC 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1131800 12 NASNNSK|FS 0.073 . PKNH_1131800 15 NNSKFSK|SK 0.178 . PKNH_1131800 17 SKFSKSK|DG 0.071 . PKNH_1131800 25 GSLLTCK|YT 0.069 . PKNH_1131800 32 YTMSFNK|TF 0.060 . PKNH_1131800 35 SFNKTFK|KD 0.068 . PKNH_1131800 36 FNKTFKK|DI 0.144 . PKNH_1131800 51 FPSLTVK|SI 0.123 . PKNH_1131800 75 NVCNFDR|GA 0.102 . PKNH_1131800 87 LSEPVLK|QY 0.081 . PKNH_1131800 93 KQYGMSR|NS 0.088 . PKNH_1131800 104 NNHQYYK|LL 0.070 . PKNH_1131800 134 IGIIVEK|SY 0.093 . PKNH_1131800 138 VEKSYGK|TH 0.062 . PKNH_1131800 189 EIVENYK|KL 0.057 . PKNH_1131800 190 IVENYKK|LT 0.077 . PKNH_1131800 194 YKKLTDR|WS 0.103 . PKNH_1131800 239 CYPYLTK|KD 0.054 . PKNH_1131800 240 YPYLTKK|DT 0.169 . PKNH_1131800 248 TFHGQEK|KV 0.079 . PKNH_1131800 249 FHGQEKK|VR 0.069 . PKNH_1131800 251 GQEKKVR|LT 0.122 . PKNH_1131800 273 ISLIVAK|C- 0.070 . ____________________________^_________________

  • Fasta :-

    >PKNH_1131800 ATGAACTTCTTTTCTAACGCATCCAACAACTCCAAGTTCAGCAAATCCAAAGATGGGAGC TTGCTCACGTGTAAATATACTATGTCCTTTAACAAGACGTTCAAGAAGGACATTGCATTC ATTCAGATTTTATTTCCGTCCCTTACTGTGAAGAGTATTACGACTTCCTTTTTCCTGCTC CTTTATTTTGCCTTCTTTATTTTGAATGTGTGCAATTTTGACAGGGGGGCCCCCCTCTAT CTAAGCGAACCTGTGTTGAAACAATATGGCATGAGCAGGAATTCCGTTACGAACAACCAC CAGTATTACAAATTATTGACGGCCACCTTTCTCCACTCCAACGTTTGGAACTTAATAATT AATGCGTACTATCTAATGAACATAGGAATTATCGTCGAGAAGAGCTACGGGAAGACACAT TACATGGGCATAATGATTTTAAGTGCTCTTTGTGGGAACTTGCTCCTCTGTGCTACTTCC AATTGCGGGAGCGTCTACATGGGAATTAGCACAATTTTGTCCGGATTCATGGGCCTCTTT CTGCAGGAAATTGTTGAAAACTACAAGAAATTGACGGACAGATGGAGCATCATTGGGAAC TACGTATTTGCATTGCTGTCCCTTTATTTGACCATATCGATGTTTTCTTTTAATGGAAAC ATCTTGGGAAACCTCGGAGGGATTTTCGGTGGTTTCTGTTATCCATACCTCACTAAAAAG GACACCTTCCACGGGCAGGAGAAGAAAGTGAGACTTACCCTGGCCGTTCTGTTGACACTA CTCCTGAGTTCAACCCTGATCAGTTTGATTGTAGCCAAGTGTTAA
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  • Fasta :-

    MNFFSNASNNSKFSKSKDGSLLTCKYTMSFNKTFKKDIAFIQILFPSLTVKSITTSFFLL LYFAFFILNVCNFDRGAPLYLSEPVLKQYGMSRNSVTNNHQYYKLLTATFLHSNVWNLII NAYYLMNIGIIVEKSYGKTHYMGIMILSALCGNLLLCATSNCGSVYMGISTILSGFMGLF LQEIVENYKKLTDRWSIIGNYVFALLSLYLTISMFSFNGNILGNLGGIFGGFCYPYLTKK DTFHGQEKKVRLTLAVLLTLLLSSTLISLIVAKC

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_113180095 SMSRNSVTNN0.994unspPKNH_1131800238 TYPYLTKKDT0.991unsp

PK6_1620c      PKH_113080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India