PKNH_1200500 | proteasome subunit beta type-7, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1200500OTHER0.9998100.0001160.000075
No Results

  • Fasta :-

    >PKNH_1200500 MKLEYMNALKEESGGFNFENIKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLSAMAVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL AQPTVFPKGTTPVLCQKIENIKKYITVEDA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1200500.fa Sequence name : PKNH_1200500 Sequence length : 270 VALUES OF COMPUTED PARAMETERS Coef20 : 3.010 CoefTot : 0.009 ChDiff : 2 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.794 1.412 0.311 0.570 MesoH : 0.052 0.557 -0.159 0.306 MuHd_075 : 17.214 9.538 6.690 3.258 MuHd_095 : 8.226 4.104 2.244 1.828 MuHd_100 : 9.199 6.090 2.657 2.269 MuHd_105 : 12.659 9.819 3.762 2.627 Hmax_075 : 4.300 7.500 -0.461 3.580 Hmax_095 : -0.350 2.000 -3.047 2.340 Hmax_100 : 3.600 5.100 -1.215 3.560 Hmax_105 : 5.250 8.867 -1.524 2.753 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9859 0.0141 DFMC : 0.9603 0.0397
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 270 PKNH_1200500 MKLEYMNALKEESGGFNFENIKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTRATEGPIVADKNCSKLHYISK 80 NIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMCVSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSS 160 CLLPFTALGSGSLSAMAVLEAKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL 240 AQPTVFPKGTTPVLCQKIENIKKYITVEDA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1200500 2 -----MK|LE 0.057 . PKNH_1200500 10 EYMNALK|EE 0.064 . PKNH_1200500 22 FNFENIK|RN 0.057 . PKNH_1200500 23 NFENIKR|NE 0.136 . PKNH_1200500 28 KRNEILK|EK 0.083 . PKNH_1200500 30 NEILKEK|GI 0.061 . PKNH_1200500 38 ITFPNFR|KT 0.109 . PKNH_1200500 39 TFPNFRK|TG 0.073 . PKNH_1200500 60 ILGADTR|AT 0.099 . PKNH_1200500 70 GPIVADK|NC 0.065 . PKNH_1200500 74 ADKNCSK|LH 0.059 . PKNH_1200500 80 KLHYISK|NI 0.077 . PKNH_1200500 108 HNVELHR|LN 0.078 . PKNH_1200500 116 NTNTQPR|VA 0.109 . PKNH_1200500 123 VAMCVSR|LT 0.092 . PKNH_1200500 130 LTQELFK|YQ 0.074 . PKNH_1200500 135 FKYQGYK|VC 0.069 . PKNH_1200500 182 MAVLEAK|YR 0.065 . PKNH_1200500 184 VLEAKYR|DN 0.162 . PKNH_1200500 193 MTIEEGK|EL 0.057 . PKNH_1200500 221 DICVITK|DG 0.074 . PKNH_1200500 228 DGSQHIR|PY 0.101 . PKNH_1200500 231 QHIRPYK|QP 0.117 . PKNH_1200500 236 YKQPNVR|LY 0.103 . PKNH_1200500 248 QPTVFPK|GT 0.095 . PKNH_1200500 257 TPVLCQK|IE 0.060 . PKNH_1200500 262 QKIENIK|KY 0.068 . PKNH_1200500 263 KIENIKK|YI 0.108 . ____________________________^_________________

  • Fasta :-

    >PKNH_1200500 ATGAAACTCGAATATATGAATGCGTTGAAAGAAGAAAGTGGAGGATTTAATTTTGAAAAT ATCAAGAGAAATGAAATTTTGAAGGAAAAGGGAATAACATTTCCCAATTTTCGAAAAACG GGAACAACCATATGTGGCTTGGTATGCCAAAATGCGGTTATTTTGGGAGCTGATACGAGA GCTACGGAAGGTCCAATAGTAGCAGATAAAAATTGTAGCAAATTACACTATATAAGTAAA AATATATACTGTGCAGGTGCAGGAGTAGCTGGAGACCTGGAGCATACTACCTTATGGTTG CAACACAATGTCGAATTGCATCGTTTAAATACGAATACGCAGCCCCGAGTAGCTATGTGT GTTTCAAGATTGACACAAGAACTGTTTAAGTACCAAGGATATAAAGTGTGCGCTATAGTG TTAGGAGGGGTAGATGTTACCGGCCCTCAGCTGTATGGTATTCATCCGCATGGTTCTTCC TGCTTGTTACCTTTCACTGCTTTGGGGTCTGGATCCCTTAGTGCTATGGCTGTATTGGAA GCTAAGTACAGGGATAATATGACTATAGAAGAAGGGAAAGAACTCGTGTGCGAAGCTATA TGTGCAGGTATTTTTAACGATCTGGGTTCAGGTGGAAATGTGGACATTTGCGTTATAACG AAGGATGGTTCGCAACACATAAGACCGTATAAGCAGCCGAACGTTCGACTATATCACTTG GCGCAACCGACTGTTTTTCCAAAGGGAACCACCCCTGTGTTGTGTCAAAAAATTGAAAAT ATTAAAAAATACATCACTGTGGAGGATGCATGA
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  • Fasta :-

    MKLEYMNALKEESGGFNFENIKRNEILKEKGITFPNFRKTGTTICGLVCQNAVILGADTR ATEGPIVADKNCSKLHYISKNIYCAGAGVAGDLEHTTLWLQHNVELHRLNTNTQPRVAMC VSRLTQELFKYQGYKVCAIVLGGVDVTGPQLYGIHPHGSSCLLPFTALGSGSLSAMAVLE AKYRDNMTIEEGKELVCEAICAGIFNDLGSGGNVDICVITKDGSQHIRPYKQPNVRLYHL AQPTVFPKGTTPVLCQKIENIKKYITVEDA

  • title: active site
  • coordinates: T42,D58,R60,K74,S170,D207,S210,G211
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PK13_2860w      PKH_122490      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India