PKNH_1210100 | proteasome subunit beta type-2, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1210100OTHER0.9951010.0045430.000356
No Results

  • Fasta :-

    >PKNH_1210100 MDTLIGLKGKNFIILAADTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDLFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENINLDEALLIFKKCFEELKKRFLLTQINYEL RIMTDNKVEAQLVTI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1210100.fa Sequence name : PKNH_1210100 Sequence length : 195 VALUES OF COMPUTED PARAMETERS Coef20 : 3.734 CoefTot : -0.450 ChDiff : 3 ZoneTo : 17 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.376 1.276 -0.070 0.471 MesoH : -1.317 -0.083 -0.574 0.116 MuHd_075 : 7.111 6.091 2.508 1.342 MuHd_095 : 21.670 12.586 5.038 3.923 MuHd_100 : 11.406 6.581 3.268 2.483 MuHd_105 : 9.362 1.695 3.646 0.963 Hmax_075 : 5.367 15.633 1.625 5.693 Hmax_095 : 8.662 14.700 0.784 4.777 Hmax_100 : 8.600 14.700 0.653 4.840 Hmax_105 : 4.300 11.667 0.653 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9935 0.0065 DFMC : 0.9944 0.0056
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 195 PKNH_1210100 MDTLIGLKGKNFIILAADTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEFIRKNVHLYQYQNSTDLFVKS 80 FAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDYLSNMDAVNKGAHGYGAYLVNGILDKYYHENINLDEALLIF 160 KKCFEELKKRFLLTQINYELRIMTDNKVEAQLVTI 240 ................................................................................ 80 ................................................................................ 160 ................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1210100 8 DTLIGLK|GK 0.054 . PKNH_1210100 10 LIGLKGK|NF 0.063 . PKNH_1210100 27 SVNSIIK|LK 0.061 . PKNH_1210100 29 NSIIKLK|ND 0.062 . PKNH_1210100 33 KLKNDDK|TK 0.060 . PKNH_1210100 35 KNDDKTK|FY 0.078 . PKNH_1210100 43 YDINGNK|CL 0.058 . PKNH_1210100 54 GGSIGDR|IQ 0.084 . PKNH_1210100 62 QFGEFIR|KN 0.072 . PKNH_1210100 63 FGEFIRK|NV 0.099 . PKNH_1210100 79 STDLFVK|SF 0.066 . PKNH_1210100 86 SFAFFTR|KN 0.091 . PKNH_1210100 87 FAFFTRK|NL 0.075 . PKNH_1210100 94 NLAYYLR|RN 0.078 . PKNH_1210100 95 LAYYLRR|NP 0.107 . PKNH_1210100 110 IAGYDNK|DG 0.067 . PKNH_1210100 129 NMDAVNK|GA 0.078 . PKNH_1210100 145 VNGILDK|YY 0.067 . PKNH_1210100 161 EALLIFK|KC 0.057 . PKNH_1210100 162 ALLIFKK|CF 0.085 . PKNH_1210100 168 KCFEELK|KR 0.054 . PKNH_1210100 169 CFEELKK|RF 0.065 . PKNH_1210100 170 FEELKKR|FL 0.233 . PKNH_1210100 181 QINYELR|IM 0.084 . PKNH_1210100 187 RIMTDNK|VE 0.058 . ____________________________^_________________

  • Fasta :-

    >PKNH_1210100 ATGGATACGCTAATAGGCCTGAAAGGCAAAAACTTCATAATCCTAGCGGCAGATACGTAC AGTGTCAATTCAATTATCAAGTTAAAAAATGACGACAAAACCAAGTTTTACGATATTAAC GGAAACAAGTGCCTTCTCCTGGGTGGATCCATTGGAGATAGAATTCAGTTTGGTGAATTC ATAAGGAAGAATGTGCACCTGTACCAGTACCAGAACTCTACCGATTTGTTTGTGAAATCG TTTGCCTTTTTTACGCGCAAAAATTTGGCCTACTATTTGAGGAGAAACCCCTACGAGGTC AATTGCCTCATAGCTGGATATGACAACAAGGACGGTTACCAACTATACTGGTGCGACTAC CTTAGCAACATGGACGCTGTCAACAAGGGTGCGCACGGATACGGTGCATACCTTGTGAAC GGTATCCTGGATAAATACTACCATGAGAATATTAATCTGGATGAAGCCTTACTCATCTTT AAAAAGTGTTTTGAAGAATTGAAGAAGAGATTTCTCCTAACCCAAATAAATTACGAACTA CGTATTATGACAGATAACAAGGTAGAGGCTCAGCTCGTGACCATTTGA
  • Download Fasta

  • Fasta :-

    MDTLIGLKGKNFIILAADTYSVNSIIKLKNDDKTKFYDINGNKCLLLGGSIGDRIQFGEF IRKNVHLYQYQNSTDLFVKSFAFFTRKNLAYYLRRNPYEVNCLIAGYDNKDGYQLYWCDY LSNMDAVNKGAHGYGAYLVNGILDKYYHENINLDEALLIFKKCFEELKKRFLLTQINYEL RIMTDNKVEAQLVTI

    No Results
No Results
No Results
No Results

PK14_3290w      PKH_123440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India