PKNH_1212700 | derlin-1, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1212700OTHER0.9997930.0001850.000022
No Results

  • Fasta :-

    >PKNH_1212700 MVQLGELLGTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYS SCIINVITYVWSKNNSSARLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1212700.fa Sequence name : PKNH_1212700 Sequence length : 213 VALUES OF COMPUTED PARAMETERS Coef20 : 4.045 CoefTot : -0.756 ChDiff : 0 ZoneTo : 71 KR : 2 DE : 3 CleavSite : 64 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.424 2.441 0.496 0.813 MesoH : 1.023 1.238 0.063 0.515 MuHd_075 : 24.034 20.073 6.614 5.888 MuHd_095 : 19.697 18.344 5.636 5.318 MuHd_100 : 24.309 20.950 7.089 6.927 MuHd_105 : 30.713 23.564 7.587 7.788 Hmax_075 : 9.683 13.400 -0.241 7.460 Hmax_095 : 12.688 26.687 4.071 7.341 Hmax_100 : 20.600 28.700 4.297 7.290 Hmax_105 : 17.300 29.517 3.561 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9849 0.0151 DFMC : 0.9762 0.0238
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 213 PKNH_1212700 MVQLGELLGTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFLYFGSFGLHFFWDAYVLIYYC 80 SSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYSSCIINVITYVWSKNNSSARLTIFFFTIKASYLPWVLTLLS 160 LIVDYNSNDNFFGILVGHIYFFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ 240 ................................................................................ 80 ................................................................................ 160 ..................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1212700 16 TIPLITR|LY 0.063 . PKNH_1212700 54 TEHQYWR|LI 0.097 . PKNH_1212700 89 LEDVTFR|NN 0.102 . PKNH_1212700 133 ITYVWSK|NN 0.069 . PKNH_1212700 139 KNNSSAR|LT 0.114 . PKNH_1212700 148 IFFFTIK|AS 0.053 . PKNH_1212700 194 PLMPVAK|NT 0.068 . PKNH_1212700 200 KNTQIFK|TP 0.056 . PKNH_1212700 206 KTPQILK|WL 0.065 . PKNH_1212700 210 ILKWLLK|QE 0.061 . ____________________________^_________________

  • Fasta :-

    >PKNH_1212700 ATGGTTCAGTTAGGAGAGCTTCTCGGCACAATTCCGCTAATAACTCGCTTATACCTCATC CTCTCGTCCATTTTGATGGTCCTATGCTCCCTGGACGTTATATCTCCCTTAAGCTTATAC CTAAATTGGAACCTAGTCTTGACTGAGCATCAGTACTGGAGACTCATCACCTGCTTCTTG TACTTCGGATCCTTCGGGCTTCATTTTTTTTGGGATGCCTACGTTTTAATATACTACTGT AGCTCACTGGAAGATGTTACCTTTAGGAATAACTCGGCCGACTTCCTCTGGATGATTATT GTGTCGTGCATGATGCTGCTGATCGTTTCGTACCTTTTCGGGGGGGTGTACTTTTACAGC AGTTGCATAATAAATGTGATCACCTATGTGTGGAGCAAGAACAATTCCTCAGCGCGCCTG ACCATTTTTTTTTTCACCATAAAGGCGTCCTACCTTCCCTGGGTACTAACCTTACTCTCC CTAATTGTCGACTACAACTCGAACGATAACTTTTTTGGTATTCTAGTTGGACATATTTAC TTCTTCTTCACGAATGTATTCCCCCTCATGCCCGTCGCCAAGAACACGCAAATTTTTAAA ACCCCCCAAATTTTGAAATGGCTGCTCAAGCAGGAGCAGTAA
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  • Fasta :-

    MVQLGELLGTIPLITRLYLILSSILMVLCSLDVISPLSLYLNWNLVLTEHQYWRLITCFL YFGSFGLHFFWDAYVLIYYCSSLEDVTFRNNSADFLWMIIVSCMMLLIVSYLFGGVYFYS SCIINVITYVWSKNNSSARLTIFFFTIKASYLPWVLTLLSLIVDYNSNDNFFGILVGHIY FFFTNVFPLMPVAKNTQIFKTPQILKWLLKQEQ

    No Results
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PK14_3155c      PKH_123690      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India