PKNH_1221300 | ubiquitin carboxyl-terminal hydrolase isozyme L3, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1221300OTHER0.9995530.0001100.000337
No Results

  • Fasta :-

    >PKNH_1221300 MLRNNIWVPIESNPESLYLYSCKLGQTKLIFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMINPNDEANGSTEQNVENIWFIKQIVPNSCGTVALFHLYGNLRNKFELDKDSLLANFFD RVKDMTPEKRGKEFEVNKSIELLHHEFSGKASGTGDDIDVDTHFIVFVEIDGKLVELDGR KDNPVIHCTTTPATFKYDTGNIIKKKFIEKCQGDNRFSALAVVSSDVV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1221300.fa Sequence name : PKNH_1221300 Sequence length : 228 VALUES OF COMPUTED PARAMETERS Coef20 : 3.655 CoefTot : -0.264 ChDiff : -10 ZoneTo : 10 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.718 1.265 -0.032 0.555 MesoH : -0.683 0.176 -0.463 0.255 MuHd_075 : 12.737 13.448 3.280 3.584 MuHd_095 : 25.689 16.717 6.773 4.952 MuHd_100 : 19.140 14.230 6.103 2.975 MuHd_105 : 8.057 7.948 4.102 0.539 Hmax_075 : 6.125 7.000 -1.052 3.456 Hmax_095 : 5.163 8.662 -0.077 4.130 Hmax_100 : 7.400 10.700 0.630 4.160 Hmax_105 : 2.450 4.667 -1.264 2.170 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8441 0.1559 DFMC : 0.9157 0.0843
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 228 PKNH_1221300 MLRNNIWVPIESNPESLYLYSCKLGQTKLIFQDIYGFDAELLDMIPQPVHAIILLYPLKEGMINPNDEANGSTEQNVENI 80 WFIKQIVPNSCGTVALFHLYGNLRNKFELDKDSLLANFFDRVKDMTPEKRGKEFEVNKSIELLHHEFSGKASGTGDDIDV 160 DTHFIVFVEIDGKLVELDGRKDNPVIHCTTTPATFKYDTGNIIKKKFIEKCQGDNRFSALAVVSSDVV 240 ................................................................................ 80 ................................................................................ 160 .................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1221300 3 ----MLR|NN 0.081 . PKNH_1221300 23 LYLYSCK|LG 0.064 . PKNH_1221300 28 CKLGQTK|LI 0.068 . PKNH_1221300 59 ILLYPLK|EG 0.058 . PKNH_1221300 84 ENIWFIK|QI 0.067 . PKNH_1221300 104 HLYGNLR|NK 0.079 . PKNH_1221300 106 YGNLRNK|FE 0.064 . PKNH_1221300 111 NKFELDK|DS 0.060 . PKNH_1221300 121 LANFFDR|VK 0.090 . PKNH_1221300 123 NFFDRVK|DM 0.065 . PKNH_1221300 129 KDMTPEK|RG 0.059 . PKNH_1221300 130 DMTPEKR|GK 0.161 . PKNH_1221300 132 TPEKRGK|EF 0.074 . PKNH_1221300 138 KEFEVNK|SI 0.089 . PKNH_1221300 150 HHEFSGK|AS 0.085 . PKNH_1221300 173 FVEIDGK|LV 0.063 . PKNH_1221300 180 LVELDGR|KD 0.085 . PKNH_1221300 181 VELDGRK|DN 0.073 . PKNH_1221300 196 TTPATFK|YD 0.062 . PKNH_1221300 204 DTGNIIK|KK 0.061 . PKNH_1221300 205 TGNIIKK|KF 0.105 . PKNH_1221300 206 GNIIKKK|FI 0.245 . PKNH_1221300 210 KKKFIEK|CQ 0.077 . PKNH_1221300 216 KCQGDNR|FS 0.085 . ____________________________^_________________

  • Fasta :-

    >PKNH_1221300 ATGCTACGGAACAATATTTGGGTTCCCATAGAGTCCAACCCGGAGTCTCTCTACCTCTAC TCCTGCAAACTTGGACAGACAAAGTTGATCTTTCAGGATATCTATGGGTTTGATGCGGAA CTCCTAGATATGATCCCGCAACCCGTGCACGCAATAATACTGTTGTACCCCCTGAAAGAA GGCATGATTAATCCAAATGATGAAGCGAATGGAAGTACTGAACAGAATGTTGAGAATATT TGGTTCATAAAACAGATTGTTCCAAATTCATGTGGAACGGTAGCCCTTTTTCACCTGTAC GGAAACTTAAGAAATAAATTTGAGCTAGACAAGGACTCTCTCTTGGCTAATTTCTTCGAT AGGGTGAAGGACATGACGCCCGAAAAACGAGGGAAGGAATTTGAAGTGAACAAGAGTATC GAACTCCTCCATCACGAATTTTCAGGAAAGGCTTCTGGCACGGGGGATGACATAGACGTT GATACCCACTTTATCGTTTTTGTCGAAATTGACGGGAAGCTCGTCGAGCTGGACGGAAGG AAGGATAATCCCGTTATTCATTGCACGACGACTCCAGCCACTTTCAAATACGACACGGGA AATATAATAAAAAAAAAGTTCATAGAAAAGTGCCAAGGTGACAACAGATTTTCAGCCTTA GCAGTTGTATCAAGTGATGTTGTGTAG
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  • Fasta :-

    MLRNNIWVPIESNPESLYLYSCKLGQTKLIFQDIYGFDAELLDMIPQPVHAIILLYPLKE GMINPNDEANGSTEQNVENIWFIKQIVPNSCGTVALFHLYGNLRNKFELDKDSLLANFFD RVKDMTPEKRGKEFEVNKSIELLHHEFSGKASGTGDDIDVDTHFIVFVEIDGKLVELDGR KDNPVIHCTTTPATFKYDTGNIIKKKFIEKCQGDNRFSALAVVSSDVV

  • title: catalytic site
  • coordinates: Q85,C91,H163,D178
No Results
No Results
No Results

PK14_2745w      PKH_124560      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India