PKNH_1245100 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1245100OTHER0.9999660.0000150.000020
No Results

  • Fasta :-

    >PKNH_1245100 MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENINIEKLVKKVADKYQQNT QKSSRRAFGVGLIVAGYSKEPHIFETKPNGSYFEYTALSFGARSHASKTYLEKNVHLFEN SSLEELTLHCLKALKCSLSSENELTAENTSLAIVGKDKPWQEATTVDLVELLIRVNAEQR TENPETDIQNEGMPTNGVDASNPQGDQIE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1245100.fa Sequence name : PKNH_1245100 Sequence length : 269 VALUES OF COMPUTED PARAMETERS Coef20 : 3.351 CoefTot : -0.191 ChDiff : -4 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.429 1.371 0.042 0.478 MesoH : -0.944 0.074 -0.542 0.113 MuHd_075 : 25.902 13.951 5.146 6.804 MuHd_095 : 26.535 15.461 5.371 6.772 MuHd_100 : 26.539 17.309 5.804 6.751 MuHd_105 : 23.751 16.944 5.783 5.088 Hmax_075 : 4.200 4.433 -1.277 3.197 Hmax_095 : -2.400 1.600 -2.886 2.188 Hmax_100 : 8.600 8.900 0.179 3.830 Hmax_105 : 0.400 3.100 -1.493 2.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7666 0.2334 DFMC : 0.8908 0.1092
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 269 PKNH_1245100 MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQEKLFKIDDYIGVTMSGITSD 80 AKVLTKYMRNECLSHKFLFDENINIEKLVKKVADKYQQNTQKSSRRAFGVGLIVAGYSKEPHIFETKPNGSYFEYTALSF 160 GARSHASKTYLEKNVHLFENSSLEELTLHCLKALKCSLSSENELTAENTSLAIVGKDKPWQEATTVDLVELLIRVNAEQR 240 TENPETDIQNEGMPTNGVDASNPQGDQIE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1245100 3 ----MYR|NL 0.090 . PKNH_1245100 18 IYSPEGR|LY 0.090 . PKNH_1245100 30 YANEAIK|QG 0.063 . PKNH_1245100 39 TCAVAIK|SK 0.097 . PKNH_1245100 41 AVAIKSK|DF 0.071 . PKNH_1245100 50 VVVCGLK|KR 0.053 . PKNH_1245100 51 VVCGLKK|RI 0.085 . PKNH_1245100 52 VCGLKKR|IS 0.192 . PKNH_1245100 55 LKKRISK|LS 0.164 . PKNH_1245100 62 LSFHQEK|LF 0.061 . PKNH_1245100 65 HQEKLFK|ID 0.073 . PKNH_1245100 82 GITSDAK|VL 0.062 . PKNH_1245100 86 DAKVLTK|YM 0.063 . PKNH_1245100 89 VLTKYMR|NE 0.075 . PKNH_1245100 96 NECLSHK|FL 0.073 . PKNH_1245100 107 ENINIEK|LV 0.068 . PKNH_1245100 110 NIEKLVK|KV 0.072 . PKNH_1245100 111 IEKLVKK|VA 0.151 . PKNH_1245100 115 VKKVADK|YQ 0.066 . PKNH_1245100 122 YQQNTQK|SS 0.090 . PKNH_1245100 125 NTQKSSR|RA 0.124 . PKNH_1245100 126 TQKSSRR|AF 0.256 . PKNH_1245100 139 IVAGYSK|EP 0.060 . PKNH_1245100 147 PHIFETK|PN 0.067 . PKNH_1245100 163 ALSFGAR|SH 0.131 . PKNH_1245100 168 ARSHASK|TY 0.081 . PKNH_1245100 173 SKTYLEK|NV 0.083 . PKNH_1245100 192 LTLHCLK|AL 0.061 . PKNH_1245100 195 HCLKALK|CS 0.058 . PKNH_1245100 216 SLAIVGK|DK 0.104 . PKNH_1245100 218 AIVGKDK|PW 0.066 . PKNH_1245100 234 LVELLIR|VN 0.072 . PKNH_1245100 240 RVNAEQR|TE 0.083 . ____________________________^_________________

  • Fasta :-

    >PKNH_1245100 ATGTATCGAAACCTTTACGACACAGACAATATTATTTACTCTCCGGAAGGGAGGCTGTAT CAAGTCGAATACGCAAATGAAGCTATAAAACAGGGTACCTGTGCCGTGGCTATAAAGTCC AAGGATTTTGTGGTCGTTTGTGGACTAAAGAAGCGCATAAGCAAGTTATCGTTCCACCAA GAGAAACTGTTCAAAATCGATGACTACATCGGTGTGACGATGAGTGGCATAACATCTGAC GCAAAGGTTTTGACGAAGTACATGCGAAACGAATGTCTGTCCCATAAGTTTCTATTTGAT GAAAATATAAATATAGAAAAATTAGTGAAAAAGGTGGCAGATAAGTATCAACAGAATACT CAAAAGAGTAGTAGAAGGGCATTTGGTGTAGGGTTAATAGTAGCTGGGTATTCTAAAGAG CCGCACATTTTTGAAACGAAGCCAAATGGTTCATATTTTGAATACACTGCTTTATCGTTT GGTGCTAGATCTCATGCATCGAAAACTTATCTAGAAAAAAATGTACATTTATTTGAAAAT TCATCGTTGGAGGAGCTTACTCTTCATTGCTTAAAGGCCTTAAAATGTTCTCTTTCAAGT GAAAATGAGTTAACCGCAGAAAATACATCGCTAGCTATTGTTGGTAAGGATAAGCCTTGG CAAGAAGCTACCACTGTAGATTTAGTGGAACTTCTAATAAGGGTAAACGCAGAACAACGA ACTGAAAATCCTGAGACGGACATTCAAAATGAGGGAATGCCTACAAATGGAGTAGATGCA TCAAATCCGCAGGGCGATCAAATAGAATGA
  • Download Fasta

  • Fasta :-

    MYRNLYDTDNIIYSPEGRLYQVEYANEAIKQGTCAVAIKSKDFVVVCGLKKRISKLSFHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLSHKFLFDENINIEKLVKKVADKYQQNT QKSSRRAFGVGLIVAGYSKEPHIFETKPNGSYFEYTALSFGARSHASKTYLEKNVHLFEN SSLEELTLHCLKALKCSLSSENELTAENTSLAIVGKDKPWQEATTVDLVELLIRVNAEQR TENPETDIQNEGMPTNGVDASNPQGDQIE

  • title: active site
  • coordinates: T33,L49,K51,K62,A162
No Results
No Results
No Results

PK14_3455w      PKH_126890      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India