PKNH_1322100 | rhomboid protease ROM3, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PKNH_1322100OTHER0.9999620.0000030.000035
No Results

  • Fasta :-

    >PKNH_1322100 MLRGDLQTGGKAQGASENVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIIIYILSC LLSENLTAPNVQVLMFLGATYGPSIKHGEIWRLLLPIFLHANWWHLAINIVCMLNLGLVI ESKYKKGNFIFLYFLSGVVGNVLTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKTMGYDFFQMSLYY SFACICALIILYLPVRLYVTDMPCALFN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1322100.fa Sequence name : PKNH_1322100 Sequence length : 268 VALUES OF COMPUTED PARAMETERS Coef20 : 3.062 CoefTot : 0.007 ChDiff : 3 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.347 2.341 0.505 0.842 MesoH : 1.110 1.267 0.099 0.550 MuHd_075 : 20.669 15.480 6.060 5.019 MuHd_095 : 17.480 8.089 4.385 3.872 MuHd_100 : 23.148 14.072 6.191 4.651 MuHd_105 : 20.470 15.758 6.158 4.383 Hmax_075 : 0.700 3.733 -1.116 2.823 Hmax_095 : 0.600 0.100 -1.675 1.230 Hmax_100 : 1.400 2.100 -1.319 1.710 Hmax_105 : 5.483 5.483 -0.303 2.648 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9570 0.0430 DFMC : 0.9458 0.0542
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 268 PKNH_1322100 MLRGDLQTGGKAQGASENVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIIIYILSCLLSENLTAPNVQVLMFLGAT 80 YGPSIKHGEIWRLLLPIFLHANWWHLAINIVCMLNLGLVIESKYKKGNFIFLYFLSGVVGNVLTTICNPCQLAVGASTSG 160 FGLIGFSILEIFLAWANLSRRAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKTMGYDFFQMSLYY 240 SFACICALIILYLPVRLYVTDMPCALFN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1322100 3 ----MLR|GD 0.080 . PKNH_1322100 11 DLQTGGK|AQ 0.074 . PKNH_1322100 27 LMEGSPK|GG 0.066 . PKNH_1322100 42 FPDMSLR|RI 0.081 . PKNH_1322100 43 PDMSLRR|II 0.122 . PKNH_1322100 86 TYGPSIK|HG 0.064 . PKNH_1322100 92 KHGEIWR|LL 0.087 . PKNH_1322100 123 GLVIESK|YK 0.062 . PKNH_1322100 125 VIESKYK|KG 0.058 . PKNH_1322100 126 IESKYKK|GN 0.128 . PKNH_1322100 180 AWANLSR|RA 0.078 . PKNH_1322100 181 WANLSRR|AK 0.146 . PKNH_1322100 183 NLSRRAK|NY 0.170 . PKNH_1322100 227 LACHYNK|TM 0.077 . PKNH_1322100 256 ILYLPVR|LY 0.074 . ____________________________^_________________

  • Fasta :-

    >PKNH_1322100 ATGCTTCGCGGAGATTTACAGACGGGAGGGAAAGCCCAGGGGGCTAGTGAAAATGTGCCC TTGATGGAGGGAAGCCCCAAGGGAGGCACCTTTTACGACATGCTCTTTCCGGATATGTCC CTGAGGAGAATCATCGTATGGATTAGCTTCGCCCAAATTATCATTTATATTTTGAGCTGT CTCCTAAGCGAAAACTTAACAGCGCCGAACGTGCAGGTGTTGATGTTTCTGGGCGCCACG TATGGACCATCCATCAAGCACGGAGAAATCTGGAGACTGCTCTTGCCAATTTTCCTCCAT GCCAATTGGTGGCACTTAGCAATTAACATCGTGTGCATGCTCAACTTAGGCCTAGTGATA GAGAGCAAATACAAGAAGGGCAATTTTATCTTCCTCTATTTTCTATCAGGGGTGGTTGGA AATGTATTGACCACCATCTGTAATCCGTGTCAACTAGCTGTCGGTGCATCAACAAGTGGA TTCGGACTCATTGGTTTTTCCATCCTGGAAATATTTTTAGCCTGGGCCAATTTGTCCAGG AGGGCTAAGAACTACTATATTTTTAATGTGTCAGTTTTTGTACTATTCTTTTTGTTTGTT AGTTTTTCTCCAACCGTTGATTTTTTTGGACACATAGGCGGCTTTCTCTGCGGGGCCTTC TTGGCCTGTCACTACAACAAGACCATGGGATACGACTTCTTCCAGATGTCCCTGTATTAC AGCTTCGCCTGTATATGCGCCCTAATTATTTTGTACCTTCCCGTTCGCCTCTACGTGACG GACATGCCATGTGCACTTTTCAATTAA
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  • Fasta :-

    MLRGDLQTGGKAQGASENVPLMEGSPKGGTFYDMLFPDMSLRRIIVWISFAQIIIYILSC LLSENLTAPNVQVLMFLGATYGPSIKHGEIWRLLLPIFLHANWWHLAINIVCMLNLGLVI ESKYKKGNFIFLYFLSGVVGNVLTTICNPCQLAVGASTSGFGLIGFSILEIFLAWANLSR RAKNYYIFNVSVFVLFFLFVSFSPTVDFFGHIGGFLCGAFLACHYNKTMGYDFFQMSLYY SFACICALIILYLPVRLYVTDMPCALFN

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PK8_2970w      PKH_050290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India