PKNH_1406600 | 26S protease regulatory subunit 10B, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1406600OTHER0.9999770.0000090.000014
No Results

  • Fasta :-

    >PKNH_1406600 MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLDDEKFIVKASSGPRYVVGCKSKIDKAKLTIGTRVSLDMTTLTVMKKLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKISEAKKLESKMEYEKI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1406600.fa Sequence name : PKNH_1406600 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.424 CoefTot : 0.000 ChDiff : 7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.565 1.194 -0.051 0.412 MesoH : -0.634 0.442 -0.354 0.203 MuHd_075 : 40.449 22.614 12.776 8.933 MuHd_095 : 19.584 15.491 8.116 3.498 MuHd_100 : 19.086 14.618 6.377 2.855 MuHd_105 : 20.640 12.902 4.788 3.017 Hmax_075 : 3.500 11.200 -0.440 4.387 Hmax_095 : -5.075 8.100 -1.626 1.980 Hmax_100 : -11.000 5.500 -4.349 0.220 Hmax_105 : -9.000 6.125 -4.568 1.180 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9442 0.0558 DFMC : 0.9357 0.0643
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 PKNH_1406600 MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLKQLDDEKFIVKASSGPRYVVG 80 CKSKIDKAKLTIGTRVSLDMTTLTVMKKLPCEVDPLVFNMISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNP 160 FLFKRVGIKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID 240 AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIH 320 ANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIRSMRDYVIEEDFYKAARKISEAKKLESKMEYEKI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1406600 4 ---MDNK|ES 0.056 . PKNH_1406600 8 DNKESIK|LY 0.060 . PKNH_1406600 12 SIKLYVK|KV 0.067 . PKNH_1406600 13 IKLYVKK|VI 0.132 . PKNH_1406600 18 KKVIEHR|EI 0.113 . PKNH_1406600 25 EIESQVK|NL 0.058 . PKNH_1406600 28 SQVKNLR|LD 0.083 . PKNH_1406600 32 NLRLDIK|EQ 0.066 . PKNH_1406600 36 DIKEQNK|IY 0.070 . PKNH_1406600 40 QNKIYEK|TE 0.054 . PKNH_1406600 46 KTEDNLK|AL 0.060 . PKNH_1406600 60 IIGQVLK|QL 0.072 . PKNH_1406600 66 KQLDDEK|FI 0.064 . PKNH_1406600 70 DEKFIVK|AS 0.060 . PKNH_1406600 76 KASSGPR|YV 0.132 . PKNH_1406600 82 RYVVGCK|SK 0.072 . PKNH_1406600 84 VVGCKSK|ID 0.068 . PKNH_1406600 87 CKSKIDK|AK 0.081 . PKNH_1406600 89 SKIDKAK|LT 0.088 . PKNH_1406600 95 KLTIGTR|VS 0.066 . PKNH_1406600 107 TTLTVMK|KL 0.059 . PKNH_1406600 108 TLTVMKK|LP 0.089 . PKNH_1406600 126 MISDIDK|SE 0.081 . PKNH_1406600 131 DKSENSK|NK 0.059 . PKNH_1406600 133 SENSKNK|VN 0.078 . PKNH_1406600 147 GLSEQIR|QM 0.125 . PKNH_1406600 150 EQIRQMR|EV 0.279 . PKNH_1406600 164 LNPFLFK|RV 0.083 . PKNH_1406600 165 NPFLFKR|VG 0.164 . PKNH_1406600 169 FKRVGIK|TP 0.063 . PKNH_1406600 172 VGIKTPK|GV 0.074 . PKNH_1406600 184 GPPGTGK|TL 0.060 . PKNH_1406600 189 GKTLLAR|AM 0.083 . PKNH_1406600 201 INCNFMR|IV 0.138 . PKNH_1406600 210 VSAIVDK|YI 0.092 . PKNH_1406600 217 YIGESAR|II 0.113 . PKNH_1406600 220 ESARIIR|EM 0.257 . PKNH_1406600 227 EMFTYAK|EH 0.060 . PKNH_1406600 245 IDAIGGR|RF 0.101 . PKNH_1406600 246 DAIGGRR|FS 0.106 . PKNH_1406600 255 QGTSADR|EI 0.077 . PKNH_1406600 259 ADREIQR|TL 0.105 . PKNH_1406600 278 EELGNVK|II 0.056 . PKNH_1406600 285 IIMATNR|PD 0.073 . PKNH_1406600 295 LDPALIR|PG 0.069 . PKNH_1406600 298 ALIRPGR|LD 0.244 . PKNH_1406600 301 RPGRLDR|KI 0.344 . PKNH_1406600 302 PGRLDRK|IE 0.071 . PKNH_1406600 313 LPNETAR|IE 0.114 . PKNH_1406600 318 ARIEILK|IH 0.062 . PKNH_1406600 323 LKIHANK|MT 0.069 . PKNH_1406600 326 HANKMTK|LG 0.065 . PKNH_1406600 337 DYESVCR|LC 0.071 . PKNH_1406600 348 FNGADLR|NV 0.133 . PKNH_1406600 360 AGMFAIR|SM 0.126 . PKNH_1406600 363 FAIRSMR|DY 0.380 . PKNH_1406600 373 IEEDFYK|AA 0.072 . PKNH_1406600 376 DFYKAAR|KI 0.105 . PKNH_1406600 377 FYKAARK|IS 0.085 . PKNH_1406600 382 RKISEAK|KL 0.076 . PKNH_1406600 383 KISEAKK|LE 0.132 . PKNH_1406600 387 AKKLESK|ME 0.061 . PKNH_1406600 392 SKMEYEK|I- 0.062 . ____________________________^_________________

  • Fasta :-

    >PKNH_1406600 ATGGATAACAAAGAAAGTATCAAACTGTACGTGAAGAAAGTTATAGAACACAGGGAAATT GAAAGCCAAGTGAAGAATCTCAGATTAGATATAAAAGAGCAAAATAAAATATACGAAAAG ACTGAAGATAACTTGAAGGCACTGCAAAGTGTAGGCCAAATAATAGGCCAAGTGCTGAAG CAGTTAGACGATGAAAAATTTATTGTAAAGGCATCAAGTGGGCCTAGATATGTGGTAGGA TGCAAGTCCAAAATAGATAAAGCGAAATTAACCATAGGCACAAGGGTGTCGTTAGACATG ACTACACTGACAGTTATGAAAAAATTACCATGTGAAGTAGACCCTTTAGTATTTAACATG ATTAGTGATATAGACAAAAGCGAAAATAGCAAAAATAAAGTGAACTACAATCAAATAGGA GGATTAAGTGAGCAAATAAGACAAATGAGGGAAGTGGTGGAGTTACCAATACTTAATCCC TTTTTATTTAAGAGGGTAGGAATTAAAACACCCAAGGGGGTTCTACTGTATGGCCCCCCA GGTACGGGTAAAACTCTATTAGCCAGGGCTATGGCATCAAACATTAATTGTAATTTTATG AGAATAGTGGTGTCAGCTATTGTAGATAAGTATATCGGTGAAAGTGCAAGAATTATTAGA GAAATGTTCACCTATGCAAAAGAACACCAACCGTGTATCATTTTTATGGACGAAATTGAT GCCATAGGAGGTAGAAGATTTTCTCAGGGTACCTCAGCAGACAGAGAAATACAAAGAACG CTTATGGAATTGTTAAATCATTTAGACGGTTTTGAGGAATTAGGAAATGTCAAAATTATT ATGGCTACCAACAGACCAGATGTTCTGGACCCAGCGTTAATTAGACCTGGTAGATTAGAT AGAAAAATTGAAATTCCGTTACCAAACGAAACTGCCAGAATTGAAATTTTAAAAATTCAC GCCAATAAAATGACAAAATTGGGGGATATAGACTACGAATCGGTTTGCAGATTGTGTGAC GGGTTCAATGGAGCTGACCTCAGAAATGTCTGTACAGAAGCAGGCATGTTTGCCATCCGA TCTATGCGCGATTACGTCATTGAGGAGGATTTTTACAAGGCCGCTCGAAAGATTAGTGAA GCTAAGAAGTTGGAGAGTAAAATGGAGTACGAAAAGATTTAG
  • Download Fasta

  • Fasta :-

    MDNKESIKLYVKKVIEHREIESQVKNLRLDIKEQNKIYEKTEDNLKALQSVGQIIGQVLK QLDDEKFIVKASSGPRYVVGCKSKIDKAKLTIGTRVSLDMTTLTVMKKLPCEVDPLVFNM ISDIDKSENSKNKVNYNQIGGLSEQIRQMREVVELPILNPFLFKRVGIKTPKGVLLYGPP GTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYAKEHQPCIIFMDEID AIGGRRFSQGTSADREIQRTLMELLNHLDGFEELGNVKIIMATNRPDVLDPALIRPGRLD RKIEIPLPNETARIEILKIHANKMTKLGDIDYESVCRLCDGFNGADLRNVCTEAGMFAIR SMRDYVIEEDFYKAARKISEAKKLESKMEYEKI

  • title: ATP binding site
  • coordinates: P179,P180,G181,T182,G183,K184,T185,L186,D237,N284
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PKNH_1406600248 SGRRFSQGTS0.994unspPKNH_1406600386 SKKLESKMEY0.992unsp

PK13_0500c      PKH_140490      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India