PKNH_1411900 | 26S protease regulatory subunit 7, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1411900OTHER0.9999370.0000280.000035
No Results

  • Fasta :-

    >PKNH_1411900 MDEDAPTQSKPLDDEDINILKSYGSGPYSTTIKKVESDISGLVSNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINGDTDQTKYIINVKQIAKFVVGLGDKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPTVTMMTVEEKPDITYNDIGGCKEQLERLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVLMATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1411900.fa Sequence name : PKNH_1411900 Sequence length : 420 VALUES OF COMPUTED PARAMETERS Coef20 : 2.663 CoefTot : 0.000 ChDiff : -3 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.406 1.247 0.094 0.454 MesoH : -0.783 0.330 -0.349 0.172 MuHd_075 : 16.861 8.805 4.084 3.423 MuHd_095 : 20.288 15.700 6.142 3.832 MuHd_100 : 16.269 10.895 4.533 2.765 MuHd_105 : 12.244 4.757 2.382 1.635 Hmax_075 : -7.262 -0.613 -3.378 1.339 Hmax_095 : -9.625 0.612 -3.974 0.814 Hmax_100 : -13.100 -3.800 -5.513 -0.010 Hmax_105 : -13.100 -3.800 -5.000 -0.163 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9920 0.0080 DFMC : 0.9946 0.0054
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 420 PKNH_1411900 MDEDAPTQSKPLDDEDINILKSYGSGPYSTTIKKVESDISGLVSNINKLCGVRESDTGLCLPNQWDLQLDKQMLNEEQPL 80 QVARCTKIINGDTDQTKYIINVKQIAKFVVGLGDKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPTVTMMTVEEKPDIT 160 YNDIGGCKEQLERLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG 240 ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVLMATNRPDTLDSALVR 320 PGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAI 400 NKVIHGCKQFSATGKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PKNH_1411900 10 DAPTQSK|PL 0.066 . PKNH_1411900 21 EDINILK|SY 0.085 . PKNH_1411900 33 PYSTTIK|KV 0.083 . PKNH_1411900 34 YSTTIKK|VE 0.082 . PKNH_1411900 48 LVSNINK|LC 0.072 . PKNH_1411900 53 NKLCGVR|ES 0.087 . PKNH_1411900 71 WDLQLDK|QM 0.057 . PKNH_1411900 84 QPLQVAR|CT 0.122 . PKNH_1411900 87 QVARCTK|II 0.151 . PKNH_1411900 97 GDTDQTK|YI 0.074 . PKNH_1411900 103 KYIINVK|QI 0.064 . PKNH_1411900 107 NVKQIAK|FV 0.078 . PKNH_1411900 115 VVGLGDK|VA 0.054 . PKNH_1411900 126 DIEEGMR|VG 0.065 . PKNH_1411900 131 MRVGVDR|TK 0.130 . PKNH_1411900 133 VGVDRTK|YK 0.069 . PKNH_1411900 135 VDRTKYK|IQ 0.064 . PKNH_1411900 143 QILLPPK|ID 0.061 . PKNH_1411900 156 MMTVEEK|PD 0.063 . PKNH_1411900 168 NDIGGCK|EQ 0.055 . PKNH_1411900 173 CKEQLER|LR 0.084 . PKNH_1411900 175 EQLERLR|EV 0.084 . PKNH_1411900 187 PLLQPER|FV 0.119 . PKNH_1411900 197 LGIDPPK|GV 0.077 . PKNH_1411900 209 GPPGTGK|TL 0.062 . PKNH_1411900 214 GKTLTAR|AI 0.092 . PKNH_1411900 219 ARAIANR|TD 0.083 . PKNH_1411900 235 GSELVQK|YV 0.154 . PKNH_1411900 242 YVGEGAR|MV 0.138 . PKNH_1411900 245 EGARMVR|EL 0.264 . PKNH_1411900 252 ELFQMAK|SK 0.081 . PKNH_1411900 254 FQMAKSK|KA 0.080 . PKNH_1411900 255 QMAKSKK|AC 0.109 . PKNH_1411900 271 DAIGGSR|GD 0.087 . PKNH_1411900 284 GDHEVQR|TM 0.110 . PKNH_1411900 299 LDGFDNR|GN 0.125 . PKNH_1411900 303 DNRGNIK|VL 0.061 . PKNH_1411900 310 VLMATNR|PD 0.073 . PKNH_1411900 320 LDSALVR|PG 0.091 . PKNH_1411900 323 ALVRPGR|ID 0.312 . PKNH_1411900 326 RPGRIDR|KI 0.417 . PKNH_1411900 327 PGRIDRK|IE 0.072 . PKNH_1411900 338 LPDLEGR|TH 0.083 . PKNH_1411900 343 GRTHIFK|IH 0.064 . PKNH_1411900 353 NTMNMSR|DV 0.146 . PKNH_1411900 356 NMSRDVR|FE 0.206 . PKNH_1411900 362 RFELLAR|LC 0.069 . PKNH_1411900 373 STGSDIR|SV 0.274 . PKNH_1411900 385 AGMFAIR|AR 0.085 . PKNH_1411900 387 MFAIRAR|RK 0.112 . PKNH_1411900 388 FAIRARR|KT 0.379 . PKNH_1411900 389 AIRARRK|TI 0.091 . PKNH_1411900 394 RKTITEK|DL 0.070 . PKNH_1411900 402 LLLAINK|VI 0.058 . PKNH_1411900 408 KVIHGCK|QF 0.075 . PKNH_1411900 415 QFSATGK|YM 0.072 . ____________________________^_________________

  • Fasta :-

    >PKNH_1411900 ATGGATGAGGACGCACCCACACAGTCCAAACCTTTGGATGATGAAGATATAAACATCCTG AAATCTTACGGATCTGGACCGTATTCAACGACCATCAAGAAAGTTGAATCCGACATAAGC GGGTTAGTATCTAACATTAACAAGCTCTGCGGAGTGAGAGAAAGTGACACGGGTTTATGT CTACCGAACCAATGGGATCTGCAGTTAGATAAACAGATGCTGAATGAAGAACAGCCACTG CAAGTAGCTAGATGTACAAAAATCATCAATGGTGACACAGATCAAACAAAGTACATTATT AACGTTAAACAAATAGCGAAATTTGTGGTAGGATTAGGAGATAAGGTTGCACCAAGTGAT ATAGAAGAAGGAATGAGAGTAGGGGTAGATAGAACTAAATACAAAATTCAAATTTTGCTA CCTCCAAAGATAGATCCTACAGTCACTATGATGACGGTGGAAGAGAAGCCTGATATTACT TACAACGATATTGGTGGGTGCAAAGAACAGTTAGAAAGGTTAAGAGAAGTGGTAGAAATG CCTTTGCTACAACCAGAAAGATTTGTAACATTAGGAATAGATCCACCCAAGGGGGTTCTA CTGTATGGTCCCCCAGGTACGGGTAAAACCCTAACCGCTAGAGCTATCGCCAATCGAACA GATGCCTGTTTCATATGTGTTATTGGTTCCGAACTTGTGCAGAAATATGTAGGTGAAGGT GCTAGAATGGTGAGAGAATTATTTCAAATGGCTAAGTCGAAAAAGGCATGTATCCTATTT ATTGATGAAGTAGATGCAATAGGAGGTTCCAGAGGAGACGAAAGTGCACATGGGGATCAT GAAGTACAAAGAACCATGTTAGAAATTGTAAATCAGCTAGATGGATTCGATAACCGAGGT AATATCAAGGTACTAATGGCTACGAACAGGCCCGACACCTTAGATAGTGCATTAGTTAGA CCTGGTAGAATCGATAGAAAGATAGAATTCAGTTTACCTGACCTTGAAGGCAGAACCCAC ATTTTTAAGATTCACGCAAATACTATGAATATGAGTAGAGATGTTAGATTTGAGCTTCTG GCTAGACTATGCCCCAACAGCACCGGTTCCGACATTAGAAGTGTCTGCACAGAAGCAGGC ATGTTTGCTATCAGAGCCAGAAGAAAAACCATCACCGAGAAGGACCTTCTGCTTGCAATA AACAAAGTCATACATGGTTGCAAACAATTCTCGGCCACGGGAAAATATATGGTGTACAAT TAG
  • Download Fasta

  • Fasta :-

    MDEDAPTQSKPLDDEDINILKSYGSGPYSTTIKKVESDISGLVSNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINGDTDQTKYIINVKQIAKFVVGLGDKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPTVTMMTVEEKPDITYNDIGGCKEQLERLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARMVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVLMATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN

  • title: ATP binding site
  • coordinates: P204,P205,G206,T207,G208,K209,T210,L211,D262,N309
No Results
No Results
IDSitePeptideScoreMethod
PKNH_1411900119 SKVAPSDIEE0.993unsp

PK13_1080c      PKH_141040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India