PKNH_1421000 | signal peptidase, putative

_IDPredictionOTHERSPmTPCS_Position
PKNH_1421000OTHER0.9657420.0037790.030479
No Results

  • Fasta :-

    >PKNH_1421000 MNRSSHYVKRSYALIFLRKNILHTNSINNNSISYHGNCKGEHIFQKCYAKFLEERKRLQS VLCRSANACNFVLSPRSRGSSLKCYSERKKRGNNKYRTRRRNFFFFNFVKINNPLNFIKK IILSFLLIFGINNYVIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARSIFLYSCI NLLLRCYALIGSNIEQSYMVILNNKIFSLIEKLKRIMAENKHVYRRGDVILLTSPVNEKK RVCKRIIAIGNDKLFVDNIKAFVHVPKDNVWVEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFINFRFISNRTS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PKNH_1421000.fa Sequence name : PKNH_1421000 Sequence length : 316 VALUES OF COMPUTED PARAMETERS Coef20 : 4.528 CoefTot : -1.381 ChDiff : 30 ZoneTo : 40 KR : 6 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.076 1.976 0.277 0.700 MesoH : 0.159 0.957 -0.088 0.366 MuHd_075 : 35.671 29.641 11.322 8.446 MuHd_095 : 40.700 17.578 9.910 8.256 MuHd_100 : 32.680 13.859 8.041 6.537 MuHd_105 : 21.263 18.513 9.442 4.003 Hmax_075 : 14.350 17.500 3.458 6.335 Hmax_095 : 13.300 10.500 1.631 4.240 Hmax_100 : 13.300 10.500 1.631 4.240 Hmax_105 : 0.088 15.500 1.041 4.865 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0890 0.9110 DFMC : 0.1422 0.8578 This protein is probably imported in mitochondria. f(Ser) = 0.1500 f(Arg) = 0.0750 CMi = 0.85714 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 316 PKNH_1421000 MNRSSHYVKRSYALIFLRKNILHTNSINNNSISYHGNCKGEHIFQKCYAKFLEERKRLQSVLCRSANACNFVLSPRSRGS 80 SLKCYSERKKRGNNKYRTRRRNFFFFNFVKINNPLNFIKKIILSFLLIFGINNYVIDMTLTSGSSMCPLINKNGVILFYV 160 CDDTVRFIHQARSIFLYSCINLLLRCYALIGSNIEQSYMVILNNKIFSLIEKLKRIMAENKHVYRRGDVILLTSPVNEKK 240 RVCKRIIAIGNDKLFVDNIKAFVHVPKDNVWVEGDNKMDSFDSRNYGFVHMDLIIGRVIFLLDPFINFRFISNRTS 320 ................................................................................ 80 ..........P..................................................................... 160 ................................................................................ 240 ............................................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PKNH_1421000 3 ----MNR|SS 0.154 . PKNH_1421000 9 RSSHYVK|RS 0.079 . PKNH_1421000 10 SSHYVKR|SY 0.412 . PKNH_1421000 18 YALIFLR|KN 0.074 . PKNH_1421000 19 ALIFLRK|NI 0.072 . PKNH_1421000 39 SYHGNCK|GE 0.069 . PKNH_1421000 46 GEHIFQK|CY 0.076 . PKNH_1421000 50 FQKCYAK|FL 0.072 . PKNH_1421000 55 AKFLEER|KR 0.072 . PKNH_1421000 56 KFLEERK|RL 0.070 . PKNH_1421000 57 FLEERKR|LQ 0.146 . PKNH_1421000 64 LQSVLCR|SA 0.194 . PKNH_1421000 76 NFVLSPR|SR 0.138 . PKNH_1421000 78 VLSPRSR|GS 0.119 . PKNH_1421000 83 SRGSSLK|CY 0.073 . PKNH_1421000 88 LKCYSER|KK 0.091 . PKNH_1421000 89 KCYSERK|KR 0.074 . PKNH_1421000 90 CYSERKK|RG 0.090 . PKNH_1421000 91 YSERKKR|GN 0.693 *ProP* PKNH_1421000 95 KKRGNNK|YR 0.070 . PKNH_1421000 97 RGNNKYR|TR 0.114 . PKNH_1421000 99 NNKYRTR|RR 0.078 . PKNH_1421000 100 NKYRTRR|RN 0.323 . PKNH_1421000 101 KYRTRRR|NF 0.122 . PKNH_1421000 110 FFFNFVK|IN 0.060 . PKNH_1421000 119 NPLNFIK|KI 0.066 . PKNH_1421000 120 PLNFIKK|II 0.103 . PKNH_1421000 152 MCPLINK|NG 0.052 . PKNH_1421000 166 VCDDTVR|FI 0.111 . PKNH_1421000 172 RFIHQAR|SI 0.134 . PKNH_1421000 185 CINLLLR|CY 0.077 . PKNH_1421000 205 MVILNNK|IF 0.065 . PKNH_1421000 212 IFSLIEK|LK 0.060 . PKNH_1421000 214 SLIEKLK|RI 0.078 . PKNH_1421000 215 LIEKLKR|IM 0.133 . PKNH_1421000 221 RIMAENK|HV 0.086 . PKNH_1421000 225 ENKHVYR|RG 0.102 . PKNH_1421000 226 NKHVYRR|GD 0.194 . PKNH_1421000 239 TSPVNEK|KR 0.054 . PKNH_1421000 240 SPVNEKK|RV 0.157 . PKNH_1421000 241 PVNEKKR|VC 0.198 . PKNH_1421000 244 EKKRVCK|RI 0.214 . PKNH_1421000 245 KKRVCKR|II 0.262 . PKNH_1421000 253 IAIGNDK|LF 0.059 . PKNH_1421000 260 LFVDNIK|AF 0.061 . PKNH_1421000 267 AFVHVPK|DN 0.089 . PKNH_1421000 277 WVEGDNK|MD 0.055 . PKNH_1421000 284 MDSFDSR|NY 0.145 . PKNH_1421000 297 MDLIIGR|VI 0.076 . PKNH_1421000 309 DPFINFR|FI 0.102 . PKNH_1421000 314 FRFISNR|TS 0.107 . ____________________________^_________________

  • Fasta :-

    >PKNH_1421000 ATGAACAGAAGTAGCCATTACGTCAAAAGATCATATGCACTAATTTTTTTACGGAAAAAT ATTTTACACACGAATAGTATTAATAATAATTCTATTAGCTACCATGGGAACTGCAAGGGA GAACATATATTCCAAAAATGTTATGCTAAATTTTTGGAAGAAAGAAAAAGGCTGCAAAGT GTACTGTGTAGAAGTGCGAACGCTTGCAACTTTGTGTTGTCCCCAAGGAGTAGAGGTTCT TCATTGAAGTGCTACTCTGAAAGGAAGAAAAGAGGTAACAATAAATACAGAACGAGAAGA AGAAATTTTTTTTTTTTCAATTTTGTAAAAATTAATAACCCCTTGAATTTTATAAAAAAA ATAATATTATCCTTTTTACTTATTTTTGGAATAAATAATTATGTTATCGATATGACGCTC ACGAGTGGATCGAGTATGTGTCCATTAATAAATAAAAACGGAGTCATCTTATTTTACGTG TGTGATGACACTGTAAGATTTATTCACCAAGCGCGTAGCATCTTTCTCTACAGTTGTATA AACCTACTGCTTCGTTGTTACGCTCTAATTGGATCAAACATTGAGCAATCGTATATGGTC ATTTTAAATAATAAAATTTTCAGCCTCATAGAAAAGTTAAAAAGAATAATGGCAGAAAAT AAACATGTTTACAGAAGAGGCGATGTCATATTATTAACTTCTCCTGTGAATGAAAAGAAA AGAGTGTGTAAAAGGATTATTGCCATAGGAAATGATAAATTATTCGTTGATAATATAAAG GCATTTGTCCACGTTCCTAAGGATAACGTATGGGTAGAAGGGGACAACAAAATGGATTCT TTTGACAGTCGAAATTATGGATTTGTTCATATGGATTTAATAATTGGCAGAGTCATTTTC TTGCTCGATCCGTTTATCAACTTTCGTTTTATTAGTAACAGAACGAGTTGA
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  • Fasta :-

    MNRSSHYVKRSYALIFLRKNILHTNSINNNSISYHGNCKGEHIFQKCYAKFLEERKRLQS VLCRSANACNFVLSPRSRGSSLKCYSERKKRGNNKYRTRRRNFFFFNFVKINNPLNFIKK IILSFLLIFGINNYVIDMTLTSGSSMCPLINKNGVILFYVCDDTVRFIHQARSIFLYSCI NLLLRCYALIGSNIEQSYMVILNNKIFSLIEKLKRIMAENKHVYRRGDVILLTSPVNEKK RVCKRIIAIGNDKLFVDNIKAFVHVPKDNVWVEGDNKMDSFDSRNYGFVHMDLIIGRVIF LLDPFINFRFISNRTS

    No Results
No Results
No Results
IDSitePeptideScoreMethod
PKNH_142100081 SSRGSSLKCY0.997unsp

PK13_1990c      PKH_141940      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India